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HEREDITAS ›› 2008, Vol. 30 ›› Issue (11): 1411-1416.doi: 10.3724/SP.J.1005.2008.01411

• 研究报告 • Previous Articles     Next Articles

The contribution of gene conversion at the same chromosome to the HLA diversity

HAO Xiang-Wen1, 2;DENG Li-Bin1;ZENG Chang-Qing1   

  1. 1. Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 101300, China;
    2. Graduate School of Chinese Academy of Sciences, Beijing 100049, China
  • Received:2008-04-01 Revised:2008-05-21 Online:2008-11-10 Published:2008-11-10
  • Contact: ZENG Chang-Qing

Abstract: Abstract: HLA is the most polymorphic gene family in human genome, which is imperative for human to face numerous heterogeneous bio-molecules. Previous studies on the formation of HLA polymorphism have been focused on gene cross-over. Here, we investigated the contribution of gene conversion, which is an important mechanism to generate polymor-phism at shaping different patterns of HLA-DRB genes. Analysis of all known HLA-DRB haplotypes and alleles demon-strated that this was a highly polymorphic gene family. Using Ester Betran’s algorithm, 32 gene conversion regions were identified. The minimal conversion tract was as short as 2 bp, and the maximum interval between two furthest SNPs was 204 bp. Moreover, gene conversion occurred more frequently in certain regions (71-75, 18-221) of various alleles, sug-gesting that these segments were conversion hotspots. Further analysis showed that the conversion regions of 71-75 and 205-217 appeared to correlate with populations of Oriental and Caucasian, respectively, indicating that conversion hotspots might be population specific.