作物组学数据库的比较和应用
宋洁,吴永波,周跃恒,柳波娟,王楠,郝转芳,吴元奇

Comparation and utilization of crop-omics databases
Song Jie,Wu Yongbo,Zhou Yueheng,Liu Bojuan,Wang Nan,Hao Zhuanfang,Wu Yuanqi
附表1 文章中列举的数据库网址
Supplementary Table 1 The database website used in this study
数据库名称及缩写 网址链接
GenBank(NCBI) https://www.ncbi.nlm.nih.gov/genbank/
EBI(EMBL) https://www.ebi.ac.uk/
DDBJ(DNA Data Bank of Japan) http://www.ddbj.nig.ac.jp/
Phytozome https://phytozome.jgi.doe.gov/pz/portal.html
GSDB http://www.ncgr.org/research/sequence/
Gramene http://www.gramene.org/
Ensembl Plants http://plants.ensembl.org/index.html
PlantGDB http://www.plantgdb.org/
planteome http://planteome.org/
EasyGO http://bioinformatics.cau.edu.cn/easygo/
Rice Data http://www.ricedata.cn/
The TIGR Rice Database http://www.tigr.org/tdb/rice/
NCPGR http://www.ncpgr.cn/web/
IC4R http://www.ic4r.org/
REDB http://redb.ncpgr.cn/
RMD http://rmd.ncpgr.cn/
BGF http://tlife.fudan.edu.cn/bgf/
BGI-RIS http://rice.genomics.org.cn/
The TIGR Maize Database http://maize.jcvi.org/
MaizeGDB https://www.maizegdb.org/
Panzea https://www.panzea.org/
MGCN http://www.agron.missouri.edu/index.html
MTM http://mtm.cshl.org/
PGSB http://mips.helmholtz-muenchen.de/plant/barley/
The TIGR Wheat Database http://www.tigr.org/tdb/e2k1/tae1/
GrainGenes https://wheat.pw.usda.gov/GG3/
ECPGR https://www.ecpgr.cgiar.org/
SHIGEN http://www.shigen.nig.ac.jp/wheat/top.html
CR-EST http://pgrc.ipk-gatersleben.de/cr-est/
GEO(NCBI) https://www.ncbi.nlm.nih.gov/geo/
ArrayExpress https://www.ebi.ac.uk/arrayexpress/
SMD http://smd.stanford.edu/
PlantTFDB http://planttfdb.cbi.pku.edu.cn/
Genevestigator https://genevestigator.com/gv/
GABI http://gabi.rzpd.de
PLEXdb http://www.barleybase.org/
PlantQTL-GE http://www.scbit.org/qtl2gene/new/
HarcEST http://harvest.ucr.edu/
DRTF http://drtf.cbi.pku.edu.cn/
RED http://red.dna.affrc.go.jp/RED/
RiceGE http://signal.salk.edu/cgi-bin/RiceGE
RiceXPro http://ricexpro.dna.affrc.go.jp/
GELBANK http://gelbank.anl.gov/
EndoNet http://endonet.bioinf.med.uni-goettingen.de/
数据库名称及缩写 网址链接
Proteome Analysis Database http://www.ebiac.uk.proteome/
Nucleolar Proteome Database, NOPdb http://www.lamondlab.com/NOPdb3.0/
GO http://www.geneontology.org/
COG/KOG http://www.ncbi.nlm.nih.gov/COG/
GOA http://www.ebi.ac.uk/GOA
UniProt(SWISS-PROT, TrEMBL, PIR) http://www.uniprot.org/
Pfam http://pfam.xfam.org/
InterPro http://www.ebi.ac.uk/interpro/
STRING https://string-db.org/cgi/input.pl
DOMINE http://domine.utdallas.edu/
Phospho.ELM http://phospho.elm.eu.org/
PMAP http://www.proteolysis.org
TRRD http://wwwmgs.bionet.nsc.ru/mgs/gnw/trrd/
PHYTOPROT http://urgi.versailles.inra.fr/phytoprot/
RPD http://gene64.dna.affrc.go.jp/RPD/
RPSD http://structure.rice.dna.affrc.go.jp/
RKD http://rkd.ucdavis.edu/
KEGG http://www.kegg.jp/kegg/
MetaCyc(PlantCyc) https://www.plantcyc.org/databases/plantcyc/
GMD(GC-MS、GC-TOF-MS) http://gmd.mpimp-golm.mpg.de/
Metlin(LC-MS、MS/MS、FTMS) https://metlin.scripps.edu/landing_page.php?pgcontent=mainPage
MMCD http://mmcd.nmrfam.wisc.edu/
MassBank http://www.massbank.jp/en/database.html
BiGG Models http://bigg.ucsd.edu/
CottonQTLdb http://www2.cottonqtldb.org:8081/
CottonGEN https://www.cottongen.org/
TILLING http://www.soybeantilling.org/
BASC http://hornbill.cspp.latrobe.edu.au/cgi-binpub/brassica/index.pl