牛SNP芯片分型检出率和分型错误率对基因型填充准确率的影响

李智,何俊,蒋隽,Richard G. Tait Jr.,Stewart Bauck,过伟,吴晓林

Impacts of SNP genotyping call rate and SNP genotyping error rate on imputation accuracy inHolsteincattle

Li Zhi,He Jun,Jiang Jun,G. Tait Jr. Richard,Bauck Stewart,Guo Wei,Wu Xiao-Lin

附表1 4个家系12头牛胚胎和3头小牛SNP分型检出率和SNP分型错误率

Supplemental table 1 Observed SNP genotyping call rate and SNP genotyping error rate for 12 embryos and 3 calves infourfamilies

家系 动物个体 SNP个数 SNP分型检出率(%) 错误SNP个数 SNP分型错误率(%) A A1* 38 926 98.50 311 0.80 B B1 31 808 80.50 2691 8.50 B2* 38 277 96.80 299 0.80 B3* 38 284 96.80 259 0.70 B4 32 916 83.30 1687 5.10 B5 25 898 65.50 3025 11.70 C C1 26 228 66.30 1823 7.00 C2 20 079 50.80 2624 13.10 C3 26 490 67.00 1956 7.40 C4 26 147 66.10 1182 4.50 C5 21 140 53.50 2726 12.90 D D1 25 117 63.50 1806 7.20 D2 24 685 62.40 1959 7.90 D3 17 630 44.60 2617 14.80 D4 17 170 43.40 3199 18.60