鹿科动物基因组学研究进展
巴恒星, 胡鹏飞, 李春义

Progress on deer genome research
Ba Hengxing, Hu Pengfei, Li Chunyi
表1 鹿科动物16个参考基因组基本信息
Table 1 Information of 16 cervid reference genome
物种 发表时间
(年)
测序/组装技术 基因组大小
(去除Gap后)
(Gb)
测序
深度(×)
Contig/
Scaffold
N50 (kb/Mb)
Scaffolds
数量
白尾鹿 (Odocoileus virginianus)a 2011 Illumina HiSeq/Allpath-lg 2.38 (2.36) 150 122.0/0.9 17,025
西方狍 (Capreolus capreolus)b 2014 Illumina HiSeq/SOAPdenovo 2.78 (2.74) 24 4.1/0.01 3,088,511
驯鹿 (Rangifer tarandus)[3] 2017 Illumina HiSeq/SOAPdenovo 2.64 (2.54) 220 89.7/0.94 58,765
赤鹿 (Cervus elaphus)[8] 2017 Illumina HiSeq/AllPaths 3.40 (1.95) 74 7.9/0.27 34,724
麋鹿 (Elaphurus davidianus)[9] 2017 Illumina HiSeq/SOAPdenovo 2.52 (2.46) 82 32.7/3.0 46,381
豚鹿 (Axis porcinus)[10] 2018 Illumina HiSeq/SOAPdenovo 2.68 (2.64) 197 172.8/20.6 136,093
黑尾鹿 (Odocoileus hemionus)[11] 2018 Illumina HiSeq/BWA; SAMtools 2.34 (2.34) 25 113.3/0.8 838,758
小麂 (Muntiacus reevesi)[6] 2019 Illumina HiSeq/Supernova; Hi-C 2.58 (2.51) 34 225.1/9.4 29,705
赤麂 (Muntiacus muntjak)[6] 2019 Illumina HiSeq/SOAPdenovo 2.57 (2.52) 68 215.5/- 25,651
白唇鹿
(Przewalskium albirostris)[12]
2019 Illumina HiSeq/Platanus 2.69 (2.64) 214 39.6/3.8 171,874
獐 (Hydropotes inermis)[12] 2019 Illumina HiSeq/Supernova 2.53 (2.48) 76 131.4/13.8 22,246
黑麂 (Muntiacus crinifrons)[12] 2019 PacBio/FALCON 2.68 (2.67) 116 8.2/1.3 21,052
驼鹿 (Alces alces)c 2019 Illumina HiSeq/Supernova 2,74 (2,54) 35 131,8/4.1 48,219
东方狍 (Capreolus pygargu)[13] 2020 Illumina HiSeq/Supernova 2.61 (2,55) 100 -/6.6 92,100
塔里木马鹿
(Cervus elaphus yarkandensis)[4]
2020 Illumina NextSeq/Supernova;
Genetic maps
2.60 (2.56) 63 275.5/31.7 19,010
梅花鹿 (Cervus nippon)d 2020 PacBio/wtdbg2; Hi-C; Optical maps 2.50 (2.50) 58 23,600/78.8 588