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研究报告

Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter

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  • 1. State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, China;
    2. Model Animal Research Center, Nanjing University, Nanjing 210061, China;
    3. School of Horticulture, Jinling Institute of Technology, Nanjing 210038, China

Received date: 2007-10-22

  Revised date: 2007-11-29

  Online published: 2008-05-10

Abstract

Arabidopsis TCH4 gene plays an important role in the biological processes related to plant secondary growth, resistance to pathogen, and adaptation to environmental stresses. It is up-regulated by various hormonal, environmental, and mechanical stimuli. Here, we identified 9 transcriptional regulatory elements from TCH4 promoter by bioinformatics approach. In which, 4 elements have been reported previously, and 5 elements are newly identified in this study. All of the identified elements contain the sequences of known cis-elements. Especially, their distribution along some co-expressed gene promoters and the orthologous promoters is typically clustered and syntenic. Based on our predictions and the information of known cis-elements, a model representing the transcriptional regulation mechanism was proposed for TCH4 gene in re-sponse to hormonal, mechanical, and environmental stimuli.

Cite this article

ZHANG Chang-Qing, WANG Jin, GAO Xiang . Computational identification of transcriptional regulatory elements in Arabidopsis TCH4 promoter[J]. Hereditas(Beijing), 2008 , 30(5) : 620 -626 . DOI: 10.3724/SP.J.1005.2008.00620

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