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The application and evaluation of map-based gene isolation in crops

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  • 1. College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China; 2. Plant Molecular Biology and Proteomics, Institute of Biotechnology, Hangzhou Academy of Agricultural Science, Hangzhou 310024, China

Received date: 2009-12-22

  Revised date: 2010-02-23

  Online published: 2010-09-20

Abstract

As an efficient strategy for gene isolation, map-based cloning has been widely applied and well advanced in crops with small genomes. However, the application of this strategy is challenging in crops with large genomes that are rich in repetitive DNA. Because of the importance of map-based cloning, its basic contents and development are summarized. In particular, the application of this strategy is analyzed and evaluated in large genome crops, and the potential directions of its development are discussed. These help to promote genes cloning in large genome crops.

Cite this article

HE Dun-Beng, RUAN Song-Lin, CHU Shui-Jin, MA Hua-Sheng . The application and evaluation of map-based gene isolation in crops[J]. Hereditas(Beijing), 2010 , 32(9) : 903 -913 . DOI: 10.3724/SP.J.1005.2010.00903

References

[1] Takahashi JS, Pinto LH, Vitaterna MH. Forward and re-verse genetic approaches to behavior in the mouse. Sci-ence, 1994, 264(5166): 1724–1733. [2] Peters JL, Cnudde F, Gerats T. Forward genetics and map-based cloning approaches. Trends Plant Sci, 2003, 8(10): 484–491. [3] He JP, Ke LP, Hong DF, Xie YZ, Wang GC, Liu PW, Yang GS. Fine mapping of a recessive genic male sterility gene (Bnms3) in rapeseed (Brassica napus) with AFLP and Arabidopsis-derived PCR markers. Theor Appl Genet, 2008, 117 (1): 11–18. [4] Tanksley SD, Ganal MW, Martin GB. Chromosome land-ing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet, 1995, 11(2): 63–68. [5] Büschges R, Hollricher K, Panstruga R, Simons G, Wolter M, Frijters A, van Daelen R, van der Lee T, Diergaarde P, Groenendijk J, Töpsch S, Vos P, Salamini F, Schulze-Lefert P. The barley Mlo gene: a novel control element of plant pathogen resistance. Cell, 1997, 88(5): 695–705. [6] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 2000, 408(6814): 796–815. [7] Yu J, Hu SN, Wang J, Wong GKS, Li SG, Liu B, Deng YJ, Dai L, Zhou Y, Zhang XQ, Cao ML, Liu J, Sun JD, Tang JB, Chen YJ, Huang XB, Lin W, Ye C, Tong W, Cong LJ, Geng JN, Han YJ, Li L, Li W, Hu GQ, Huang XQ, Li WJ, Li J, Liu ZW, Li L, Liu JP, Qi QH, Liu JS, Li L, Li T, Wang XG, Lu H, Wu TT, Zhu M, Ni PX, Han H, Dong W, Ren XY, Feng XL, Cui P, Li XR, Wang H, Xu X, Zhai WX, Xu Z, Zhang JS, He SJ, Zhang JG, Xu JC, Zhang KL, Zheng XW, Dong JH, Zeng WY, Tao L, Ye J, Tan J, Ren XD, Chen XW, He J, Liu DF, Tian W, Tian CG, Xia HA, Bao QY, Li G, Gao H, Cao T, Wang J, Zhao WM, Li P, Chen W, Wang XD, Zhang Y, Hu JF, Wang J, Liu S, Yang J, Zhang GY, Xiong YQ, Li ZJ, Mao L, Zhou CS, Zhu Z, Chen RS, Hao BL, Zheng WM, Chen SY, Guo W, Li GJ, Liu SQ, Tao M, Wang J, Zhu LH, Yuan LP, Yang HM. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science, 2002, 296(5565): 79–92. [8] Goff SA, Ricke D, Lan TH, Presting G, Wang RL, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong JP, Miguel T, Paszkowski U, Zhang SP, Colbert M, Sun WL, Chen LL, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tav-tigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S. A draft se-quence of the rice genomes (Oryza sativa L. ssp. japonica). Science, 2002, 296(5565): 92–100. [9] McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L). DNA Res, 2002, 9(6): 199–207. [10] Lukowitz W, Gillmor CS, Scheible WR. Positional cloning in Arabidopsis: why it feels good to have a genome initiative working for you. Plant Physiol, 2000, 123(3): 795–805. [11] Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, Last RL. Arabidopsis map-based cloning in the post-genome era. Plant Physiol, 2002, 129(2): 440–450. [12] Chu ZH, Fu BY, Yang H, Xu CG, Li ZK, Sanchez A, Park YJ, Bennetzen JL, Zhang QF, Wang SP. Targeting xa13, a recessive gene for bacterial blight resistance in rice. Thero Appl Genet, 2006, 112(3): 455–461. [13] Liu XQ, Wang L, Chen S, Lin F, Pan QH. Genetic and physical of Pi36(t), a novel rice resistance gene located on rice chromosome 8. Mol Genet Genomics, 2005, 274(4): 394–401. [14] Adams MD, Kelley JM, Gocayne JD, Dubnick M, Po-lymeropoulos
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