[an error occurred while processing this directive]
en

Advances in plant microRNA and stresses response

Expand
  • National Key Facility for Crop Gene Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China

Received date: 2010-01-22

  Revised date: 2010-03-22

  Online published: 2010-10-20

Abstract

MicroRNAs (miRNAs) are endogenous 16?29 nt non-coding small RNAs that were are generally found in species and typically encoded by endogenous genes. They play an important regulatory role at post-transcription level by targeting mRNA cleavage and translation repression. More and more plant miRNAs had been predicted and identified along with the development of bioinformatics and experimental techniques. At stress conditions, plant miRNAs also play a role in adaptation by up-regulating or down-regulating the miRNA expression. The biogenesis, action mode with target genes, bio-logical functions of plant miRNAs, as well as the stress-responsive miRNAs, were reviewed and the methodologies of miRNA study were also briefly summarized in this paper.

Cite this article

HU Zhen-Hua, XIE Chuan-Xiao . Advances in plant microRNA and stresses response[J]. Hereditas(Beijing), 2010 , 32(10) : 1018 -1030 . DOI: 10.3724/SP.J.1005.2010.01018

References

[1] Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 2004, 116(2): 281–297. [2] Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T. A uniform system for microRNA annotation. RNA, 2003, 9(3): 277–279. [3] Zhang BH, Stellwag EJ, Pan XP. Large-scale genome analysis reveals unique features of microRNAs. Gene, 2009, 443(1–2): 100–109. [4] Mica E, Gianfranceschi L, Pè ME. Characterization of five microRNA families in maize. J Exp Bot, 2006, 57(11): 2601–2612. [5] Humphreys DT, Westman BJ, Martin DI, Preiss T. Mi-croRNAs control translation initiation by inhibiting eu-karyotic initiation factor 4E/cap and poly(A) tail function. Proc Natl Acad Sci USA, 2005, 102(47): 16961–16966. [6] Jing Q, Huang S, Guth S, Zarubin T, Motoyama A, Chen J, Padova FD, Lin SC, Gram H, Han J. Involvement of mi-croRNA in AU-rich element-mediated mRNA instability. Cell, 2005, 120(5): 623–634. [7] Vaucheret H. Post-transcriptional small RNA pathwaysin plants: mechanisms and regulations. Genes Dev, 2006, 20(7): 759–771. [8] Lagos-Quintana M, Rauhut R, Lendeckel W, Tusch1 T. Identification of novel genes coding for small expressed RNAs. Science, 2001, 294(5543): 853–858. [9] Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L, Rappsilber J, Mann M, Dreyfuss G. MiRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev, 2002, 16(6): 720–728. [10] Voinnet O. Origin, Biogenesis, and Activity of Plant Mi-croRNAs. Cell, 2009, 136(4): 669–687. [11] Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN. MicroRNA genes are transcribed by RNA polymerase II. EMBO J, 2004, 23(20): 4051–4060. [12] Zhang B, Pan X, Stellwag EJ. Identification of soybean micro-RNAs and their targets. Planta, 2008, 229(1): 161–182. [13] Lee RC, Feinbaum RL, Ambros V. The C.elegans hetero-chronic gene lin-4 encodes small RNAs withantisense complementarity to lin-14. Cell, 1993, 75(5): 843–854. [14] Jian XY, Zhang L, Li GL, Zhang L, Wang XJ, Cao XF, Fang XH, Chen F, Identification of novel stress-regulated microRNAs from Oryza sativa L. Genomics, 2010, 95(1): 47–55. [15] Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 2004, 16(8): 2001–2019. [16] Zhang BH, Pan XP, Anderson TA. Identification of 188 conserved maize microRNAs and their targets. FEBS Lett, 2006, 580(15): 3753–3762. [17] Xie FL, Huang SQ, Gou K, Xiang AL, Zhu YY, Nie L, Yang ZM. Computational identification of novel mi-croRNAs and targets in Brassica napus. FEBS Lett, 2007, 581(7): 1464–1474. [18] Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol, 2008, 8: 37–49. [19] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR. Identification of nutri-ent-responsive Arabidopsis and rapeseed micrornas by comprehensive real-time polymerase chain reaction pro-filing and small RNA sequencing. Plant Physiol, 2009, 150(3): 1541–1555. [20] Zhou XF, Wang GD, Sutoh K, Zhu JK, Zhang WX. Identi-fication of cold-inducible microRNAs in plants by tran-scriptome analysis. Biochim Biophys Act, 2008, 1779(11): 780–788. [21] Zhao BT, Liang RQ, Ge LF, Li W, Xiao HS, Lin HX, Ruan KC, Jin YX. Identification of drought-induced microRNAs in rice. Biochem Biophys Res Commun, 2007, 354(2): 585–590. [22] Jones-Rhoades MW, Bartel DP. Computational identifica-tion of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell, 2004, 14(6): 787–799. [23] Griffiths-Jones S
Outlines

/