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Research Article

Mining and characterization of preterm birth related genes

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  • Genetics and Birth Defects Control Center, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing 100045, China

Received date: 2019-03-21

  Revised date: 2019-05-08

  Online published: 2019-05-11

Abstract

Preterm birth (PTB) refers to birth before 37 completed gestational weeks. PTB is the leading cause of neonatal deaths and is associated with various neonatal complications and adult-onset chronic diseases. According to twin and family studies, genetic variants account for about 15% to 35% of the incidence of PTB. However, the molecular epidemiology of PTB is still unclear. By mining the PTB-related researches in the literature database and the disease databases, and combining two filtering methods, 355 PTB-related genes were selected. The enrichment analyses of molecular function revealed that the main functions of PTB-related genes include: receptor ligand activity, cytokine receptor binding, cytokine activity, growth factor activity, etc.; the main pathways from KEGG enrichment were the AGE-RAGE signaling pathway in diabetic complications, Chagas disease, and the IL-17 signaling pathway, the TNF signaling pathway, etc, as well as several immune-related pathways from Reactome enrichment. There were differences in the number of transcripts between PTB-related genes and other genes in the genome (α = 0.1, P = 0.06), but there was no significant difference in GC content and gene lengths. The results suggest that PTB-related genes are mostly in immune-related pathways, and have molecular functions closely related to immunity. Our work provides an important resource for the study of the genetical mechanisms of PTB.

Cite this article

Xuanshi Liu, Wei Li . Mining and characterization of preterm birth related genes[J]. Hereditas(Beijing), 2019 , 41(5) : 413 -421 . DOI: 10.16288/j.yczz.19-078

References

[1] Liu L, Oza S, Hogan D, Chu Y, Perin J, Zhu J, Lawn JE, Cousens S, Mathers C, Black RE . Global, regional, and national causes of under-5 mortality in 2000-15: an updated systematic analysis with implications for the sustainable development goals . Lancet, 2016,388(10063):3027-3035.
[2] Blencowe H, Cousens S, Oestergaard MZ, Chou D, Moller AB, Narwal R, Adler A, Vera Garcia C, Rohde S, Say L, Lawn JE . National, regional, and worldwide estimates of preterm birth rates in the year 2010 with time trends since 1990 for selected countries: a systematic analysis and implications . Lancet, 2012,379(9832):2162-2172.
[3] Sipola-Lepp?nen M, V??r?sm?ki M, Tikanm?ki M, Matinolli HM, Miettola S, Hovi P, Wehkalampi K, Ruokonen A, Sundvall J, Pouta A, Eriksson JG, J?rvelin MR, Kajantie E , Cardiometabolic risk factors in young adults who were born preterm . Am J Epidemiol, 2015,181(11):861-873.
[4] Wu W, Witherspoon DJ, Fraser A, Clark EA, Rogers A, Stoddard GJ, Manuck TA, Chen K, Esplin MS, Smith KR, Varner MW, Jorde LB . The heritability of gestational age in a two-million member cohort: implications for spontaneous preterm birth . Hum Genet, 2015,134(7):803-808.
[5] Kistka ZA, DeFranco EA, Ligthart L, Willemsen G, Plunkett J, Muglia LJ, Boomsma DI . Heritability of parturition timing: an extended twin design analysis. Am J Obstet Gynecol, 2008, 199(1): 43.e1-5.
[6] York TP, Eaves LJ, Lichtenstein P, Neale MC, Svensson A, Latendresse S, L?ngstr?m N , Strauss JF 3rd. Fetal and maternal genes' influence on gestational age in a quantitative genetic analysis of 244,000 Swedish births . Am J Epidemiol, 2013,178(4):543-550.
[7] Liang HY, Wu BY, Chen DF, Yang F, Hu HY, Chen L, Xu XP . Association of PON2 Gene Polymorphisms in Neonates with Preterm. Hereditas(Beijing), 2002,24(5):515-518.
[7] 梁红业, 吴白燕, 陈大方, 杨帆, 胡海燕, 陈栎, 徐希平 , 新生儿PON2基因多态性与早产的关系. 遗传, 2002,24(5):515-518.
[8] Annells MF, Hart PH, Mullighan CG, Heatley SL, Robinson JS, Bardy P, McDonald HM . Interleukins-1, -4, -6, -10, tumor necrosis factor, transforming growth factor-beta, FAS, and mannose-binding protein C gene polymorphisms in australian women: risk of preterm birth . Am J Obstet Gynecol, 2004,191(6):2056-2067.
[9] Krediet TG, Wiertsema SP, Vossers MJ, Hoeks SB, Fleer A, Ruven HJ, Rijkers GT . Toll-like receptor 2 polymorphism is associated with preterm birth . Pediatr Res, 2007,62(4):474-476.
[10] Papazoglou D, Galazios G, Koukourakis MI, Kontomanolis EN, Maltezos E . Association of -634G/C and 936C/T polymorphisms of the vascular endothelial growth factor with spontaneous preterm delivery . Acta Obstet Gyn Scan, 2004,83(5):461-465.
[11] Chen BH, Carmichael SL, Shaw GM, Iovannisci DM, Lammer EJ . Association between 49 infant gene polymorphisms and preterm delivery . Am J Med Genet A, 2007,143A(17):1990-1906
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