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The regulatory effect of protein acetylation modification on autophagy

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  • School of Medicine, Zhejiang University, Hangzhou 310020, China

Received date: 2021-09-13

  Revised date: 2021-12-01

  Online published: 2021-12-02

Supported by

Supported by the National Natural Science Foundation of China No(31600934)

Abstract

Autophagy is a highly conserved material degradation pathway from yeast to humans that depends on vacuoles or lysosomes. It plays an important role in the maintenance of homeostasis, and its dysfunction is closely related to the pathogenesis of major diseases, such as neurodegenerative disorders, metabolic diseases, and malignant tumors. As an important biological process for the maintenance of homeostasis, autophagy is highly regulated. Acetylation of proteins is a reversible post-translational modification and plays an important role in the regulation of autophagy. In this review, we summarize research results on the modulation of acetylation in the regulation of autophagy and aim to provide insights into this biological process for the advancement of the basic research and development of preventive and therapeutic strategies against autophagy-related diseases.

Cite this article

Jing Liu, Cong Yi, Shiming Xu . The regulatory effect of protein acetylation modification on autophagy[J]. Hereditas(Beijing), 2022 , 44(1) : 15 -24 . DOI: 10.16288/j.yczz.21-329

References

[1] Cecconi F, Levine B. The role of autophagy in mammalian development: cell makeover rather than cell death. Dev Cell, 2008, 15(3):344-357.
[2] Reggiori F, Ungermann C. Autophagosome maturation and fusion. J Mol Biol, 2017, 429(4):486-496.
[3] Wang LM, Qi H, Tang YC, Shen HM. Post-translational modifications of key machinery in the control of mitophagy. Trends Biochem Sci, 2020, 45(1):58-75.
[4] Hill SM, Wrobel L, Rubinsztein DC. Post-translational modifications of Beclin 1 provide multiple strategies for autophagy regulation. Cell Death Differ, 2019, 26(4):617-629.
[5] Reiche J, Huber O. Post-translational modifications of tight junction transmembrane proteins and their direct effect on barrier function. Biochim Biophys Acta Biomembr, 2020, 1862(9):183330.
[6] Guerra-Castellano A, Márquez I, Pérez-Mejías G, Díaz-Quintana A, De la Rosa MA, Díaz-Moreno I. Post-translational modifications of cytochrome c in cell life and disease. Int J Mol Sci, 2020, 21(22):8483.
[7] Janke C, Chloë Bulinski J. Post-translational regulation of the microtubule cytoskeleton: mechanisms and functions. Nat Rev Mol Cell Biol, 2011, 12(12):773-786.
[8] Mizushima N, Yoshimori T, Ohsumi Y. The role of Atg proteins in autophagosome formation. Annu Rev Cell Dev Biol, 2011, 27:107-132.
[9] Allfrey VG, Faulkner R, Mirsky AE. Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proc Natl Acad Sci USA, 1964, 51(5):786-794.
[10] Verdin E, Ott M. 50 years of protein acetylation: from gene regulation to epigenetics, metabolism and beyond. Nat Rev Mol Cell Biol, 2015, 16(4):258-264.
[11] Yorimitsu T, Klionsky DJ. Autophagy: molecular machinery for self-eating. Cell Death Differ, 2005, 12(Suppl 2):1542-1552.
[12] Klionsky DJ, Cuervo AM, Dunn WA, Levine B, van der Klei I, Seglen PO. How shall I eat thee? Autophagy, 2007, 3(5):413-416.
[13] Majeski AE, Dice JF. Mechanisms of chaperone-mediated autophagy. Int J Biochem Cell Biol, 2004, 36(12):2435-2444.
[14] Li WW, Li J, Bao JK. Microautophagy: lesser-known self-eating. Cell Mol Life Sci, 2012, 69(7):1125-1136.
[15] Johansen T, Lamark T. Selective autophagy mediated by autophagic adapter proteins. Autophagy, 2011, 7(3):279-296.
[16] A M, Latario CJ, Pickrell LE, Higgs HN. Lysine acetylation of cytoskeletal proteins: emergence of an actin code. J Cell Biol, 2020, 219(12):e202006151.
[17] Drazic A, Myklebust LM, Ree R, Arnesen T. The world of protein acetylation. Biochim Biophys Acta, 2016, 1864(10):1372-1401.
[18] Liu YX, Yang H, Liu XC, Gu HH, Li YZ, Sun C. Protein acetylation: a novel modus of obesity regulation. J Mol Med (Berl), 2021, 99(9):1221-1235.
[19] Zhang YJ, Sun ZX, Jia JQ, Du TJ, Zhang NC, Tang Y, Fang Y, Fang D. Overview of histone modification. Adv Exp Med Biol, 2021, 1283:1-16.
[20] Füllgrabe J, Hajji N, Joseph B. Cracking the death code: apoptosis-related histone modifications. Cell Death Differ, 2010, 17(8):1238-1243.
[21] Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y. New nomenclature for chromatin-modifying enzymes. Cell, 2007, 131(4):633-636.
[22] Shao YF, Gao ZH, Marks PA, Jiang XJ. Apoptotic and autophagic cell death induced by histone deacetylase inhibitors. Proc Natl Acad Sci USA, 2004, 101(52):18030-18035.
[23] Eisenberg T, Knauer H, Schauer A, Büttner S, Ruckenstuhl C, Carmona-Gutierrez D, Ring J, Schroeder S, Magnes C, Antonacci L, Fussi H, Deszcz L, Hartl R, Schraml E, Criollo A, Megalou E, Weiskopf D, Laun P, Heeren G, Breitenbach M, Grubeck-Loebenstein B, Herker E, Fahrenkrog B, Fröhlich KU, Sinner F, Tavernarakis N, Minois N, Kroemer G, Madeo F. Induction of autophagy by spermidine promotes longevity. Nat Cell Biol, 2009, 11(11):1305-1314.
[24] Füllgrabe J, Klionsky DJ, Joseph B. The return of the nucleus: transcriptional and epigenetic control of autophagy. Nat Rev Mol Cell Biol, 2014, 15(1):65-74.
[25] Saidi D, Cheray M, Osman AM, Stratoulias V, Lindberg OR, Shen XL, Blomgren K, Joseph B. Glioma-induced SIRT1-dependent activation of hMOF histone H4 lysine 16 acetyltransferase in microglia promotes a tumor supporting phenotype. Oncoimmunology, 2017, 7(2):e1382790.
[26] Füllgrabe J, Lynch-Day MA, Heldring N, Li WB, Struijk RB, Ma Q, Hermanson O, Rosenfeld MG, Klionsky DJ, Joseph B. The histone H4 lysine 16 acetyltransferase hMOF regulates the outcome of autophagy. Nature, 2013, 500(7463):468-471.
[27] Chen HF, Fan MY, Pfeffer LM, Laribee RN. The histone H3 lysine 56 acetylation pathway is regulated by target of rapamycin (TOR) signaling and functions directly in ribosomal RNA biogenesis. Nucleic Acids Res, 2012, 40(14):6534-6546.
[28] Das C, Lucia MS, Hansen KC, Tyler JK. CBP/p300- mediated acetylation of histone H3 on lysine 56. Nature, 2009, 459(7243):113-117.
[29] Lee IH, Finkel T. Regulation of autophagy by the p300 acetyltransferase. J Biol Chem, 2009, 284(10):6322-6328.
[30] Brown AK, Webb AE. Regulation of FoXO factors in mammalian cells. Curr Top Dev Biol, 2018, 127:165-192.
[31] Bertaggia E, Coletto L, Sandri M. Post-translational modifications control FoxO3 activity during denervation. Am J Physiol Cell Physiol, 2012, 302(3):C587-C596.
[32] Mammucari C, Milan G, Romanello V, Masiero E, Rudolf R, Del Piccolo P, Burden SJ, Di Lisi R, Sandri C, Zhao JH, Goldberg AL, Schiaffino S, Sandri M. FoxO3 controls autophagy in skeletal muscle in vivo. Cell Metab, 2007, 6(6):458-471.
[33] Zhao Y, Yang J, Liao WJ, Liu XY, Zhang H, Wang S, Wang DL, Feng JN, Yu L, Zhu WG. Cytosolic FoxO1 is essential for the induction of autophagy and tumour suppressor activity. Nat Cell Biol, 2010, 12(7):665-675.
[34] Settembre C, Di Malta C, Polito VA, Garcia Arencibia M, Vetrini F, Erdin S, Erdin SU, Huynh T, Medina D, Colella P, Sardiello M, Rubinsztein DC, Ballabio A. TFEB links autophagy to lysosomal biogenesis. Science, 2011, 332(6036):1429-1433.
[35] Napolitano G, Esposito A, Choi H, Matarese M, Benedetti V, Di Malta C, Monfregola J, Medina DL, Lippincott- Schwartz J, Ballabio A. mTOR-dependent phosphorylation controls TFEB nuclear export. Nat Commun, 2018, 9(1):3312.
[36] Bao JT, Zheng LJ, Zhang Q, Li XY, Zhang XF, Li ZY, Bai X, Zhang Z, Huo W, Zhao XY, Shang SJ, Wang QS, Zhang C, Ji JG. Deacetylation of TFEB promotes fibrillar Aβ degradation by upregulating lysosomal biogenesis in microglia. Protein Cell, 2016, 7(6):417-433.
[37] Zhang JB, Wang JG, Zhou ZH, Park JE, Wang LM, Wu S, Sun X, Lu LQ, Wang TR, Lin QS, Sze SK, Huang DS, Shen HM. Importance of TFEB acetylation in control of its transcriptional activity and lysosomal function in response to histone deacetylase inhibitors. Autophagy, 2018, 14(6):1043-1059.
[38] Wang YS, Huang YW, Liu JQ, Zhang JN, Xu MM, You ZY, Peng C, Gong ZF, Liu W. Acetyltransferase GCN5 regulates autophagy and lysosome biogenesis by targeting TFEB. EMBO Rep, 2020, 21(1):e48335.
[39] Bánréti A, Sass M, Graba Y. The emerging role of acetylation in the regulation of autophagy. Autophagy, 2013, 9(6):819-829.
[40] Pang JQ, Xiong H, Ou YK, Yang HD, Xu YD, Chen SJ, Lai L, Ye YY, Su ZW, Lin HQ, Huang QH, Xu XD, Zheng YQ. SIRT1 protects cochlear hair cell and delays age-related hearing loss via autophagy. Neurobiol Aging, 2019, 80:127-137.
[41] Pehar M, Jonas MC, Hare TM, Puglielli L. SLC33A1/AT-1 protein regulates the induction of autophagy downstream of IRE1/XBP1 pathway. J Biol Chem, 2012, 287(35):29921-29930.
[42] Huang R, Xu YF, Wan W, Shou X, Qian JL, You ZY, Liu B, Chang CM, Zhou TH, Lippincott-Schwartz J, Liu W. Deacetylation of nuclear LC3 drives autophagy initiation under starvation. Mol Cell, 2015, 57(3):456-466.
[43] Song TT, Su HF, Yin W, Wang LM, Huang R. Acetylation modulates LC3 stability and cargo recognition. FEBS Lett, 2019, 593(4):414-422.
[44] Su H, Yang F, Wang QT, Shen QH, Huang JT, Peng C, Zhang Y, Wan W, Wong CCL, Sun QM, Wang FD, Zhou TH, Liu W. VPS34 acetylation controls its lipid kinase activity and the initiation of canonical and non-canonical autophagy. Mol Cell, 2017, 67(6): 907-921.e7.
[45] Lin SY, Li TY, Liu Q, Zhang CX, Li XT, Chen Y, Zhang SM, Lian GL, Liu Q, Ruan K, Wang Z, Zhang CS, Chien KY, Wu JW, Li QX, Han JH, Lin SC. GSK3-TIP60-ULK1 signaling pathway links growth factor deprivation to autophagy. Science, 2012, 336(6080):477-481.
[46] Lee IH, Cao L, Mostoslavsky R, Lombard DB, Liu J, Bruns NE, Tsokos M, Alt FW, Finkel T. A role for the NAD-dependent deacetylase Sirt1 in the regulation of autophagy. Proc Natl Acad Sci USA, 2008, 105(9):3374-3379.
[47] Sacitharan PK, Bou-Gharios G, Edwards JR. SIRT1 directly activates autophagy in human chondrocytes. Cell Death Discov, 2020, 6:41.
[48] Sebti S, Prébois C, Pérez-Gracia E, Bauvy C, Desmots F, Pirot N, Gongora C, Bach AS, Hubberstey AV, Palissot V, Berchem G, Codogno P, Linares LK, Liaudet-Coopman E, Pattingre S. BAT3 modulates p300-dependent acetylation of p53 and autophagy-related protein 7 (ATG7) during autophagy. Proc Natl Acad Sci USA, 2014, 111(11):4115-4120.
[49] Yi C, Ma MS, Ran LL, Zheng JX, Tong JJ, Zhu J, Ma CY, Sun YF, Zhang SJ, Feng WZ, Zhu LY, Le Y, Gong XQ, Yan XH, Hong B, Jiang FJ, Xie ZP, Miao D, Deng HT, Yu L. Function and molecular mechanism of acetylation in autophagy regulation. Science, 2012, 336(6080):474-477.
[50] Li YT, Yi C, Chen CC, Lan H, Pan M, Zhang SJ, Huang YC, Guan CJ, Li YM, Yu L, Liu L. A semisynthetic Atg3 reveals that acetylation promotes Atg3 membrane binding and Atg8 lipidation. Nat Commun, 2017, 8:14846.
[51] Cheng XW, Ma XL, Zhu Q, Song DD, Ding XM, Li L, Jiang X, Wang XY, Tian R, Su H, Shen ZR, Chen S, Liu T, Gong WH, Liu W, Sun QM. Pacer is a mediator of mTORC1 and GSK3-TIP60 signaling in regulation of autophagosome maturation and lipid metabolism. Mol Cell, 2019, 73(4): 788-802.e7.
[52] Shen QH, Shi Y, Liu JQ, Su H, Huang JT, Zhang Y, Peng C, Zhou TH, Sun QM, Wan W, Liu W. Acetylation of STX17 (syntaxin 17) controls autophagosome maturation. Autophagy, 2021, 17(5):1157-1169.
[53] Fang DM, Xie HZ, Hu T, Shan H, Li M. Binding features and functions of ATG3. Front Cell Dev Biol, 2021, 9:685625.
[54] Nuta GC, Gilad Y, Gershoni M, Sznajderman A, Schlesinger T, Bialik S, Eisenstein M, Pietrokovski S, Kimchi A. A cancer associated somatic mutation in LC3B attenuates its binding to E1-like ATG7 protein and subsequent lipidation. Autophagy, 2019, 15(3):438-452.
[55] Schaaf MBE, Keulers TG, Vooijs MA, Rouschop KMA. LC3/GABARAP family proteins: autophagy-(un)related functions. FASEB J, 2016, 30(12):3961-3978.
[56] Tanida I, Ueno T, Kominami E. LC3 and autophagy. Methods Mol Biol, 2008, 445:77-88.
[57] Tanida I, Ueno T, Kominami E. LC3 conjugation system in mammalian autophagy. Int J Biochem Cell Biol, 2004, 36(12):2503-2518.
[58] Huang R, Liu W. Identifying an essential role of nuclear LC3 for autophagy. Autophagy, 2015, 11(5):852-853.
[59] Fan Z, Wu J, Chen QN, Lyu AK, Chen JL, Sun Y, Lyu Q, Zhao YX, Guo A, Liao ZY, Yang YF, Zhu SY, Jiang XS, Chen B, Xiao Q. Type 2 diabetes-induced overactivation of p300 contributes to skeletal muscle atrophy by inhibiting autophagic flux. Life Sci, 2020, 258:118243.
[60] Huang S, Li Y, Sheng GH, Meng QW, Lv QB. Sirtuin 1 promotes autophagy and proliferation of endometrial cancer cells by reducing acetylation level of LC3. Cell Biol Int, 2021, 45(5):1050-1059.
[61] Hill SM, Wrobel L, Rubinsztein DC. Post-translational modifications of Beclin 1 provide multiple strategies for autophagy regulation. Cell Death Differ, 2019, 26(4):617-629.
[62] Nascimbeni AC, Codogno P, Morel E. Phosphatidylinositol- 3-phosphate in the regulation of autophagy membrane dynamics. FEBS J, 2017, 284(9):1267-1278.
[63] Boukhalfa A, Nascimbeni AC, Ramel D, Dupont N, Hirsch E, Gayral S, Laffargue M, Codogno P, Morel E. PI3KC2α-dependent and VPS34-independent generation of PI3P controls primary cilium-mediated autophagy in response to shear stress. Nat Commun, 2020, 11(1):294.
[64] Russell RC, Tian Y, Yuan HX, Park HW, Chang YY, Kim J, Kim H, Neufeld TP, Dillin A, Guan KL. ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase. Nat Cell Biol, 2013, 15(7):741-750.
[65] Munson MJ, Ganley IG. MTOR, PIK3C3, and autophagy: signaling the beginning from the end. Autophagy, 2015, 11(12):2375-2376.
[66] Wan W, You ZY, Xu YF, Zhou L, Guan ZL, Peng C, Wong CCL, Su H, Zhou TH, Xia HG, Liu W. mTORC1 phosphorylates acetyltransferase p300 to regulate autophagy and lipogenesis. Mol Cell, 2017, 68(2): 323-335.e6.
[67] Holczer M, Hajdú B, Lőrincz T, Szarka A, Bánhegyi G, Kapuy O. Fine-tuning of AMPK-ULK1-mTORC1 regulatory triangle is crucial for autophagy oscillation. Sci Rep, 2020, 10(1):17803.
[68] Liu PH, Huang GJ, Wei T, Gao J, Huang CL, Sun MW, Zhu LM, Shen WL. Sirtuin 3-induced macrophage autophagy in regulating NLRP3 inflammasome activation. Biochim Biophys Acta Mol Basis Dis, 2018, 1864(3):764-777.
[69] Cheng XW, Ma XL, Ding XM, Li L, Jiang X, Shen ZR, Chen S, Liu W, Gong WH, Sun QM. Pacer mediates the function of Class III PI3K and HOPS complexes in autophagosome maturation by engaging stx17. Mol Cell, 2017, 65(6): 1029-1043.e5.
[70] Chen YY, Chen HY, Lu DR. Molecular mechanisms of SNARE proteins in regulating autophagy. Hereditas (Beijing), 2014, 36(6):547-551.
[70] 陈元渊, 陈红岩, 卢大儒. SNARE蛋白调控细胞自噬的分子机制. 遗传, 2014, 36(6):547-551.
[71] Cadwell K, Liu J, Brown SL, Miyoshi H, Loh J, Lennerz J, Kishi C, Wumesh KC, Carrero JA, Hunt S, Stone C, Brunt EM, Xavier RJ, Sleckman BP, Li E, Mizushima N, Stappenbeck TS, Virgin HW. A unique role for autophagy and Atg16L1 in Paneth cells in murine and human intestine. Nature, 2008, 456(7219):259-263.
[72] Nakai A, Yamaguchi O, Takeda T, Higuchi Y, Hikoso S, Taniike M, Omiya S, Mizote I, Matsumura Y, Asahi M, Nishida K, Hori M, Mizushima N, Otsu K. The role of autophagy in cardiomyocytes in the basal state and in response to hemodynamic stress. Nat Med, 2007, 13(5):619-624.
[73] Taneike M, Yamaguchi O, Nakai A, Hikoso S, Takeda T, Mizote I, Oka T, Tamai T, Oyabu J, Murakawa T, Nishida K, Shimizu T, Hori M, Komuro I, Takuji Shirasawa TS, Mizushima N, Otsu K. Inhibition of autophagy in the heart induces age-related cardiomyopathy. Autophagy, 2010, 6(5):600-606.
[74] Hamano T, Gendron TF, Causevic E, Yen SH, Lin WL, Isidoro C, Deture M, Ko LW. Autophagic-lysosomal perturbation enhances tau aggregation in transfectants with induced wild-type tau expression. Eur J Neurosci, 2008, 27(5):1119-1130.
[75] Wold MS, Lim J, Lachance V, Deng ZQ, Yue ZY. ULK1-mediated phosphorylation of ATG14 promotes autophagy and is impaired in Huntington's disease models. Mol Neurodegener, 2016, 11(1):76.
[76] Komatsu M, Waguri S, Ueno T, Iwata J, Murata S, Tanida I, Ezaki J, Mizushima N, Ohsumi Y, Uchiyama Y, Kominami E, Tanaka K, Chiba T. Impairment of starvation- induced and constitutive autophagy in Atg7-deficient mice. J Cell Biol, 2005, 169(3):425-434.
[77] Feng X, Zhang H, Meng LB, Song HW, Zhou QX, Qu C, Zhao P, Li QH, Zou C, Liu X, Zhang ZY. Hypoxia-induced acetylation of PAK1 enhances autophagy and promotes brain tumorigenesis via phosphorylating ATG5. Autophagy, 2021, 17(3):723-742.
[78] Richter-Landsberg C, Leyk J. Inclusion body formation, macroautophagy, and the role of HDAC6 in neurodegeneration. Acta Neuropathol, 2013, 126(6):793-807.
[79] Esteves AR, Arduíno DM, Silva DF, Viana SD, Pereira FC, Cardoso SM. Mitochondrial metabolism regulates microtubule acetylome and autophagy trough sirtuin-2: impact for Parkinson's disease. Mol Neurobiol, 2018, 55(2):1440-1462.
[80] Eckschlager T, Plch J, Stiborova M, Hrabeta J. Histone deacetylase inhibitors as anticancer drugs. Int J Mol Sci, 2017, 18(7):1414.
[81] Cao DJ, Wang ZV, Battiprolu PK, Jiang N, Morales CR, Kong YL, Rothermel BA, Gillette TG, Hill JA. Histone deacetylase (HDAC) inhibitors attenuate cardiac hypertrophy by suppressing autophagy. Proc Natl Acad Sci USA, 2011, 108(10):4123-4128.
[82] Chiao MT, Cheng WY, Yang YC, Shen CC, Ko JL. Suberoylanilide hydroxamic acid (SAHA) causes tumor growth slowdown and triggers autophagy in glioblastoma stem cells. Autophagy, 2013, 9(10):1509-1526.
[83] Beltrao P, Bork P, Krogan NJ, van Noort V. Evolution and functional cross-talk of protein post-translational modifications. Mol Syst Biol, 2013, 9:714.
[84] Grégoire S, Tremblay AM, Xiao L, Yang Q, Ma KW, Nie JY, Mao ZX, Wu ZG, Giguère V, Yang XJ. Control of MEF2 transcriptional activity by coordinated phosphorylation and sumoylation. J Biol Chem, 2006, 281(7):4423-4433.
[85] Swaney DL, Beltrao P, Starita L, Guo AL, Rush J, Fields S, Krogan NJ, Villén J. Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation. Nat Methods, 2013, 10(7):676-682.
[86] Vu LD, Gevaert K, De Smet I. Protein language: post-translational modifications talking to each other. Trends Plant Sci, 2018, 23(12):1068-1080.
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