[an error occurred while processing this directive]
Research Article

Conditional editing of the Drosophila melanogaster genome using single transcripts expressing Cas9 and sgRNA

Expand
  • 1. School of Laboratory Animal & Shandong Laboratory Animal Center, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan 250024, China
    2. School of Clinical and Basic Medical Sciences, Shandong First Medical University, Jinan 250024, China

Received date: 2023-04-15

  Revised date: 2023-06-09

  Online published: 2023-07-03

Supported by

National Natural Science Foundation of China(31801079)

Abstract

The CRISPR/Cas9(clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR- associated protein 9) system, a highly efficient, simple, and easy genome editing technology, offers significant potential for genetic engineering and has been commonly applied in gene function studies in Drosophila melanogaster. However, when using CRISPR/Cas9 system to edit Drosophila melanogaster gene, Cas9 and sgRNA expression elements exist in different Drosophila melanogaster individuals, and Cas9 and sgRNA must be integrated into an individual through a complex genetic hybridization process, which has a long and complex operation cycle In this study, on the basis of the CRISPR/Cas9 system, we introduced the tRNA-sgRNA system and triplex elements, used triplex elements to link Cas9 and tRNA-sgRNA genes, stabilized the end of Cas9 mRNA after single transcript cutting, and made the expression of both Cas9 protein and sgRNA with a single transcript a reality. And as we obtained the corresponding phenotypic progeny in one hybridization, genetic manipulation was simplified. We found that conditional knockout of the white(w) gene in the Drosophila melanogaster eye and the broad(br) gene in the adult wing disc resulted in corresponding phenotypes that matched expectations using our new conditional gene editing system. So the significant advances in this new conditional gene editing system over the existing CRISPR/Cas9 system are that it is more efficient, extendable, and easy to use.

Cite this article

Bingzheng Wang, Chao Zhang, Jiali Zhang, Jin Sun . Conditional editing of the Drosophila melanogaster genome using single transcripts expressing Cas9 and sgRNA[J]. Hereditas(Beijing), 2023 , 45(7) : 593 -601 . DOI: 10.16288/j.yczz.23-099

References

[1] Carroll D. Genome editing: past, present, and future. Yale J Biol Med, 2017, 90(4): 653-659.
[2] Tyagi S, Kumar R, Das A, Won SY, Shukla P. CRISPR-Cas9 system: a genome-editing tool with endless possibilities. J Biotechnol, 2020, 319: 36-53.
[3] Cong L, Ran FA, Cox D, Lin SL, Barretto R, Habib N, Hsu PD, Wu XB, Jiang WY, Marraffini LA, Zhang F. Multiplex genome engineering using CRISPR/Cas systems. Science, 2013, 339(6121): 819-823.
[4] Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 2012, 337(6096): 816-821.
[5] Mali P, Yang LH, Esvelt KM, Aach J, Guell M, Dicarlo JE, Norville JE, Church GM.RNA-guided human genome engineering via Cas9. Science, 2013, 339(6121): 823-826.
[6] Gratz SJ, Ukken FP, Rubinstein CD, Thiede G, Donohue LK, Cummings AM, O'connor-Giles KM.Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila. Genetics, 2014, 196(4): 961-971.
[7] Ren YX, Xiao RD, Lou XM, Fang XD. Research advance and application in the gene therapy of gene editing technologies. Hereditas(Beijing), 2019, 41(1): 18-27.
[7] 任云晓, 肖茹丹, 娄晓敏, 方向东. 基因编辑技术及其在基因治疗中的应用. 遗传, 2019, 41(1): 18-27.
[8] Wilusz JE, Jnbaptiste CK, Lu LY, Kuhn CD, Joshua-Tor L, Sharp PA. A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails. Genes Dev, 2012, 26(21): 2392-2407.
[9] Campa CC, Weisbach NR, Santinha AJ, Incarnato D, Platt RJ. Multiplexed genome engineering by Cas12a and CRISPR arrays encoded on single transcripts. Nat Methods, 2019, 16(9): 887-893.
[10] Ren XJ, Sun J, Housden BE, Hu YH, Roesel C, Lin SL, Liu LP, Yang ZH, Mao DC, Sun LZ, Wu QJ, Ji JY, Xi JZ, Mohr SE, Xu J, Perrimon N, Ni JQ.Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9. Proc Natl Acad Sci USA, 2013, 110(47): 19012-19017.
[11] Qiao HH, Wang F, Xu RG, Sun J, Zhu RB, Mao DC, Ren XJ, Wang X, Jia Y, Peng P, Shen D, Liu LP, Chang ZJ, Wang GR, Li S, Ji JY, Liu QF, Ni JQ. An efficient and multiple target transgenic RNAi technique with low toxicity in Drosophila. Nat Commun, 2018, 9(1): 4160.
[12] Gurumurthy CB, O'brien AR, Quadros RM, Adams J, Alcaide P, Ayabe S, Ballard J, Batra SK, Beauchamp MC, Becker KA, Bernas G, Brough D, Carrillo-Salinas F, Chan W, Chen HY, Dawson R, Demambro V, D'hont J, Dibb KM, Eudy JD, Gan L, Gao J, Gonzales A, Guntur AR, Guo HP, Harms DW, Harrington A, Hentges KE, Humphreys N, Imai S, Ishii H, Iwama M, Jonasch E, Karolak M, Keavney B, Khin NC, Konno M, Kotani Y, Kunihiro Y, Lakshmanan I, Larochelle C, Lawrence CB, Li L, Lindner V, Liu XD, Lopez-Castejon G, Loudon A, Lowe J, Jerome-Majewska LA, Matsusaka T, Miura H, Miyasaka Y, Morpurgo B, Motyl K, Nabeshima YI, Nakade K, Nakashiba T, Nakashima K, Obata Y, Ogiwara S, Ouellet M, Oxburgh L, Piltz S, Pinz I, Ponnusamy MP, Ray D, Redder RJ, Rosen CJ, Ross N, Ruhe MT, Ryzhova L, Salvador AM, Alam SS, Sedlacek R, Sharma K, Smith C, Staes K, Starrs L, Sugiyama F, Takahashi S, Tanaka T, Trafford AW, Uno Y, Vanhoutte L, Vanrockeghem F, Willis BJ, Wright CS, Yamauchi Y, Yi X, Yoshimi K, Zhang XS, Zhang Y, Ohtsuka M, Das S, Garry DJ, Hochepied T, Thomas P, Parker-Thornburg J, Adamson AD, Yoshiki A, Schmouth JF, Golovko A, Thompson WR, Lloyd KCK, Wood JA, Cowan M, Mashimo T, Mizuno S, Zhu H, Kasparek P, Liaw L, Miano JM, Burgio G. Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation. Genome Biol, 2019, 20(1): 171.
[13] Jin M, Eblimit A, Pulikkathara M, Corr S, Chen R, Mardon G. Conditional knockout of retinal determination genes in differentiating cells in Drosophila. FEBS J, 2016, 283(15): 2754-2766.
[14] Hamilton DL, Abremski K. Site-specific recombination by the bacteriophage P1 lox-Cre system. Cre-mediated synapsis of two lox sites. J Mol Biol, 1984, 178(2): 481-486.
[15] Andrews BJ, Proteau GA, Beatty LG, Sadowski PD. The FLP recombinase of the 2 micron circle DNA of yeast: interaction with its target sequences. Cell, 1985, 40(4): 795-803.
[16] Golic KG, Lindquist S. The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome. Cell, 1989, 59(3): 499-509.
[17] Germani F, Bergantinos C, Johnston LA. Mosaic analysis in Drosophila. Genetics, 2018, 208(2): 473-490.
[18] Siegal ML, Hartl DL. Transgene coplacement and high efficiency site-specific recombination with the Cre/loxP system in Drosophila. Genetics, 1996, 144(2): 715-726.
[19] Heidmann D, Lehner CF. Reduction of Cre recombinase toxicity in proliferating Drosophila cells by estrogen- dependent activity regulation. Dev Genes Evol, 2001, 211(8-9): 458-465.
[20] Theodosiou NA, Xu T. Use of FLP/FRT system to study Drosophila development. Methods, 1998, 14(4): 355-365.
[21] Nakazawa N, Taniguchi K, Okumura T, Maeda R, Matsuno K. A novel Cre/loxP system for mosaic gene expression in the Drosophila embryo. Dev Dyn, 2012, 241(5): 965-974.
[22] Charpentier E, Doudna JA. Biotechnology: rewriting a genome. Nature, 2013, 495(7439): 50-51.
[23] Ding D, Chen KY, Chen YD, Li H, Xie KB. Engineering introns to express RNA guides for Cas9- and Cpf1- mediated multiplex genome editing. Mol Plant, 2018, 11(4): 542-552.
Outlines

/