[an error occurred while processing this directive]
Research Article

Screening and application of unstable genetically resistant strains in fission yeast

Expand
  • 1. School of Pharmacy, Sichuan Industrial Institute of Antibiotics, Chengdu University, Chengdu 610106, China
    2. Antibiotic Research and Re-Evaluation Key Laboratory of Sichuan Province, Chengdu University, Chengdu 610106, China
    3. Institute of Life Sciences, Zhejiang University, Hangzhou 310000, China

Received date: 2024-10-14

  Revised date: 2024-12-18

  Online published: 2025-01-07

Supported by

National Natural Science Foundation of China(32400477);Natural Science Foundation of Sichuan Province(2023NSFSC1231)

Abstract

Reversible alterations at DNA sequence or epigenetic levels can result in phenotypes that are unstably inherited. The reversibility of these inheritable changes might be uniquely beneficial for adaption to possible fluctuations in environment. However, unstable changes are always ignored for the genetic instability in traditional studies, especially in the cause of drug resistance. In this study, we conduct a specific genetic screen in fission yeast using rapamycin (+caffeine) and obtain 173 resistant isolates. In contrast to the common strategy of isolating stable genetic mutants, we passage the cell culture with rapamycin resistance on drug free condition and test the resistance of offspring every five days, and obtain 14 strains that exhibit unstable resistance to rapamycin (the drug resistance is lost randomly among the cell progenies without drug selection pressure). Further studies show that the unstable genetic resistance of some strains is regulated by reversible DNA sequence alterationat the ssp1 gene locus. This study provides new insights and relevant scientific basis for the regulatory mechanism of unstable drug resistance in the process of rapamycin as a clinical anti-tumor drug, and a new possible target for solving the problem of drug resistance.

Cite this article

Lufeng Dan, Yiwen Chu, Xinrong Wang, Xiangwei He . Screening and application of unstable genetically resistant strains in fission yeast[J]. Hereditas(Beijing), 2025 , 47(5) : 589 -599 . DOI: 10.16288/j.yczz.24-266

References

[1] Farlow A, Long HG, Arnoux S, Sung W, Doak TG, Nordborg M, Lynch M. The Spontaneous mutation rate in the fission yeast schizosaccharomyces pombe. Genetics, 2015, 201(2): 737-744.
[2] Muñoz-López M, García-Pérez JL. DNA transposons: nature and applications in genomics. Current Genomics, 2010, 11(2): 115-128.
[3] Blake KL, O'Neill AJ. Transposon library screening for identification of genetic loci participating in intrinsic susceptibility and acquired resistance to antistaphylococcal agents. J Antimicrob Chemother, 2013, 68(1): 12-16.
[4] Hannan AJ. Tandem repeats mediating genetic plasticity in health and disease. Nat Rev Genet, 2018, 19(5): 286-298.
[5] Gemayel R, Vinces MD, Legendre M, Verstrepen KJ. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet, 2010, 44: 445-477.
[6] Crimi C, Benincasa G, Cirri S, Mutes R, Faenza M, Napoli C. Clinical epigenetics and multidrug-resistant bacterial infections: host remodelling in critical illness. Epigenetics, 2020, 15(10): 1021-1034.
[7] Ragunathan K, Jih G, Moazed D. Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment. Science, 2015, 348(6230): 1258699.
[8] Torres-Garcia S, Yaseen I, Shukla M, Audergon PNCB, White SA, Pidoux AL, Allshire AC. Epigenetic gene silencing by heterochromatin primes fungal resistance. Nature, 2020, 585(7825): 453-458.
[9] Calo S, Shertz-Wall C, Lee SC, Bastidas RJ, Nicolás FE, Granek JA, Mieczkowski P, Torres-Martínez S, Ruiz- Vázquez RM, Cardenas ME, Heitman J. Antifungal drug resistance evoked via RNAi-dependent epimutations. Nature, 2014, 513(7519): 555-558.
[10] Chang Z, Billmyre RB, Lee SC, Heitman J. Broad antifungal resistance mediated by RNAi-dependent epimutation in the basal human fungal pathogen Mucor circinelloides. PLoS Genet, 2019, 15(2): e1007957.
[11] Calo S, Nicolás FE, Lee SC, Vila A, Cervantes M, Torres-Martinez S, Ruiz-Vazquez RM, Cardenas ME, Heitman J. A non-canonical RNA degradation pathway suppresses RNAi-dependent epimutations in the human fungal pathogen Mucor circinelloides. PLoS Genet, 2017, 13(3): e1006686.
[12] Saxton RA, Sabatini DM. mTOR signaling in growth, metabolism, and disease. Cell, 2017, 168(6): 960-976.
[13] Gwinn DM, Shackelford DB, Egan DF, Mihaylova MM, Mery A, Vasquez DS, Turk BE, Shaw RJ. AMPK phosphorylation of raptor mediates a metabolic checkpoint. Mol Cell, 2008, 168(6): 960-976.
[14] Hardie DG. AMPK—sensing energy while talking to other signaling pathways. Cell Metab, 2014, 20(6): 939-952.
[15] Kim DH, Sarbassov DD, Ali SM, King JE, Latek RR, Erdjument-Bromag HE, Tempst P, Sabatini DM. mTOR interacts with raptor to form a nutrient-sensitive complex that signals to the cell growth machinery. Cell, 2002, 110(2): 163-175.
[16] Gaubitz C, Oliveira TM, Prouteau M, Leitner A, Karuppasamy M, Konstantinidou G, Rispal D, Eltschinger S, Robinson GC, Thore S, Aebersold R, Schaffitzel C, Loewith R. Molecular basis of the rapamycin insensitivity of target of rapamycin complex 2. Mol Cell, 2015, 58(6): 977-988.
[17] Laplante M, Sabatini DM. mTOR signaling in growth control and disease. Cell, 2012, 149(2): 274-293.
[18] Saitoh S, Mori A, Uehara L, Masuda F, Soejima S, Yanagida M. Mechanisms of expression and translocation of major fission yeast glucose transporters regulated by CaMKK/phosphatases, nuclear shuttling, and TOR. Mol Biol Cell, 2015, 149(2): 274-293.
[19] Otsubo Y, Yamamato M. TOR signaling in fission yeast. Crit Rev Biochem Mol Biol, 2008, 149(2): 274-293.
[20] Laor D, Cohen A, Kupiec M, Weisman R. TORC1 regulates developmental responses to nitrogen stress via regulation of the GATA transcription factor Gaf1. mBio, 2015, 6(4): e00959.
[21] Loewith R, Jacinto E, Wullschleger S, Lorberg A, Crespo JL, Bonenfant D, Oppliger W, Jenoe P, Hall MN. Two TOR complexes, only one of which is rapamycin sensitive, have distinct roles in cell growth control. Mol Cell, 2002, 10(3): 457-468.
[22] Rallis C, Maury LL, Georgescu T, Pancaldi V, Bahler J. Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Biol Open, 2014, 3(2): 161-171.
[23] Rallis C, Codlin S, Bähler J. TORC1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression, and cell proliferation of fission yeast. Aging Cell, 2013, 12(4): 563-573.
[24] Li WZ, Yi J, Agbu P, Zhou Z, Kelley RL, Kallgren S, Jia ST, He XW. Replication stress affects the fidelity of nucleosome-mediated epigenetic inheritance. PLoS Genet, 2017, 12(4): 563-573.
[25] Ekwall K, Thon G. Spore analysis and tetrad dissection of schizosaccharomyces pombe. Cold Spring Harb Protoc, 2017, 2017(7): pdb.prot091710.
[26] Escorcia W, Forsburg SL. Tetrad dissection in fission yeast. Methods Mol Biol, 2018, 1721: 179-187.
[27] Verstrepen KJ, Jansen A, Lewitter F, Fink GR. Intragenic tandem repeats generate functional variability. Nat Genet, 2005, 37(9): 986-990.
[28] Dan LF, Li YZ, Chen SH, Liu JB, Wang Y, Li FT, He XW, Carey LB. A rapidly reversible mutation generates subclonal genetic diversity and unstable drug resistance. Proc Natl Acad Sci USA, 2021, 118(43): e2019060118.
[29] Davie E, Forte GMA, Petersen J. Nitrogen regulates AMPK to control TORC1 signaling. Curr Biol, 2015, 25(4): 445-454.
[30] Livnat A, Love AC. Mutation and evolution: conceptual possibilities. Bioessays, 2024, 46(2): e2300025.
[31] Liu ZY, Ren H, Chen C, Zhang JJ, Zhang XM, Shi Y, Shi LY, Chen Y, Cheng F, Jia L, Chen M, Fan QW, Zhang JR, Li WT, Wang MC, Ren ZL, Liu YC, Ni M, Sun HY, Yan JW. Actual mutational research of 19 autosomal STRs based on restricted mutation model and big data. Hereditas (Beijing), 2021, 43(10): 949-961.
  刘志勇, 任贺, 陈冲, 张京晶, 张晓梦, 石妍, 石林玉, 陈滢, 程凤, 贾莉, 陈曼, 范庆炜, 张家榕, 李万婷, 王萌春, 任子林, 刘雅诚, 倪铭, 孙宏钰, 严江伟. 基于有限突变模型和大规模数据的19个常染色体STR的实际突变率研究. 遗传, 2021, 43(10): 949-961.
Outlines

/