| [1]Illumina Inc. Illumina Sequencing Technology. http://www. illumina.com/documents/products/techspotlights/techspotlight_sequencing.pdf.
[2]Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res, 2010, 38(6): 1767-1771.
[3]Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler Transform. Bioinformatics, 2010, 26(5): 589-595.
[4]Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer
[5]N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 2009, 25(16): 2078-2079.
[6]Picard. http://picard.sourceforge.net
[7]McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res, 2010, 20(9): 1297-1303.
[8]Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res, 2010, 38(16): e164.
[9]Scbwartz RL, Pboenix T, Foy BD著. 盛春, 蒋永清, 王晖译. Perl语言入门 (第五版). 南京: 东南大学出版社, 2009, 200.
[10]ORACLE INC. N1 Grid Engine 6 用户指南. http://docs.oracle.com/cd/E19080-01/n1.grid.eng6/817-7681/esqcr/index.html. |
