研究报告

应用生物信息学寻找山羊新的microRNA分子及其实验验证

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  • 1. 上海交通大学医学遗传研究所, 上海 200040;
    2. 卫生部医学胚胎分子生物学重点实验室, 上海市胚胎与生殖工程重点实验室, 上海 200040

收稿日期: 2008-03-02

  修回日期: 2008-04-02

  网络出版日期: 2008-10-10

Computational and experimental identification of novel microRNAs in goat

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  • 1. Shanghai Institute of Medical Genetics, Shanghai Jiao Tong University, Shanghai 200040, China;
    2. Key Lab of Medical Embryo Molecular Biology, the Ministry of Health; Shanghai Laboratory of Embryo and Reproduction Engineering, Shanghai 200040, China

Received date: 2008-03-02

  Revised date: 2008-04-02

  Online published: 2008-10-10

摘要

摘要: microRNA(miRNA)是一类长约22个碱基的非编码RNA分子, 在转录后水平调节基因的表达及其在细胞的增殖、分化、凋亡等过程中起着重要的调控作用。根据miRNA分子具有一定的保守性, 文章将人、小鼠、牛、猪和狗5种哺乳动物已知的miRNA分子与NCBI公布的与山羊具有极高同源性的绵羊基因组序列对比, 获得11条miRNA候选分子, 然后通过逆转录聚合酶链反应(RT-PCR)验证, 发现在山羊脑组织中这11条分子均有表达, 肝脏组织中有5条分子表达, 初步确定为山羊新的miRNA分子, 为寻找山羊miRNA提供了新的 思路。

关键词: miRNA; 山羊; 生物信息学

本文引用格式

陈海漩,严忠海,龙健儿,颜景斌,黄英 . 应用生物信息学寻找山羊新的microRNA分子及其实验验证[J]. 遗传, 2008 , 30(10) : 1326 -1332 . DOI: 10.3724/SP.J.1005.2008.01326

Abstract

Abstract: microRNA (miRNA) is a class of non-coding small RNA molecules with roughly 22 nucleotides in length, regu-lating gene expression on post-transcriptional level and playing an important role in cell proliferation, differentiation and apoptosis process. Based on the conservation of miRNAs sequence, we compared the known miRNAs among five mam-mals, i.e., human, mouse, cattle, pig and dog with the sequence of sheep genome that is highly homologous to goat genome, published on the NCBI, and 11 candidate miRNAs were eventually obtained. RT-PCR analysis showed the expression of the 11 miRNAs in brain and 5 in liver, indicating that they might be novel miRNAs. The methodology provides an alternative approach to the exploration of new miRNAs in goat.

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