ApoB与UCP基因间上位效应对鸡腹脂性状影响的遗传学分析
收稿日期: 2009-05-21
修回日期: 2009-09-28
网络出版日期: 2010-01-15
基金资助
国家高技术研究发展计划项目(863计划) (编号:2006AA10A120), 国家重点基础研究发展规划(973计划)项目(编号:2006CB102105)和黑龙江省教育厅项目(编号:11531025)资助
Genetic analysis of epistatic effects between ApoB and UCP on abdominal fat trait in chicken
Received date: 2009-05-21
Revised date: 2009-09-28
Online published: 2010-01-15
已有研究表明, 上位效应在畜禽重要复杂经济性状的表型形成过程中发挥重要作用。文章选取对肉鸡7 周龄腹脂率有显著影响的载脂蛋白B(Apoliprotein B, ApoB)基因T123G位点与解耦连蛋白(Uncoupling protein, UCP)基因C1197A位点, 在东北农业大学肉鸡高、低腹脂双向选择品系8、9、10世代内检测这两个SNPs的多态性并利用Natural and Orthogonal InterActions (NOIA)模型分析二者之间的上位效应对7周龄腹脂率的影响。结果表明, 在高脂系内这两个位点之间存在着对7周龄腹脂率有显著影响的上位效应组分(P<0.05), 并且在连续多世代选育过程中仍能持续稳定存在; 同时, 在低脂系中二者之间各上位效应组分对腹脂率均无影响(P>0.05)。此结果意味着, 至少在高脂系内, 腹脂率的遗传受到这两个基因间上位效应的影响; 同时提示两系间脂肪性状QTL或重要候选基因功能位点之间不同的遗传互作模式可能是引起这两个品系腹脂性状巨大表型差异的重要影响因素之一。
户国,王守志,张森,陈维星,刘爽,田建伟,李辉 . ApoB与UCP基因间上位效应对鸡腹脂性状影响的遗传学分析[J]. 遗传, 2010 , 32(1) : 59 -66 . DOI: 10.3724/SP.J.1005.2010.00059
It has been found that epistasis for selective response plays an indispensible role in animal genetics and breeding. In this study, the polymorphisms of T123G in apoliprotein B (ApoB) and C1197A in uncoupling protein (UCP) among individuals from the 8th to the 10th generation populations of the Northeast Agricultural University broiler lines divergently selected for abdominal fat content (NEAUHFL) were detected, and genetic analysis of the epistatic effects between the two SNPs on abdominal fat percentage (AFP) was performed using Natural and Orthogonal InterActions (NOIA) model. According to these assays, we concluded that at least one out of four epistatic components between these two SNPs was significantly associated with AFP (P<0.05) in fat lines from the 8th to the 10th generations of NEAUHFL; on the contrary, none was significantly associated with AFP (P>0.05) in lean lines. Our results suggested that epistatic interactions among QTLs and functional SNPs in candidate genes affecting fat traits might lead to differences in growth patterns of fat traits between lean and fat chicken lines.
[1] 张文英, 程君奇, 朱军, 吴为人. 上位性及其在遗传育种研究中的应用. 生物信息学, 2004, 2(2): 39–41, 50.
[2] Cheverud JM, Routman EJ. Epistasis and its contribution to genetic variance components. Genetics, 1995, 139(3): 1455–1461.
[3] 余四斌, 周芳. 植物杂种优势遗传基础的研究进展. 种子, 1998, (6): 53–56, 58.
[4] 余四斌, 李建雄, 徐才国, 谈移芳, 高友军, 李香花, 张启发. 上位性效应是水稻杂种优势的重要遗传基础. 中国科学(C辑), 1998, 28(4): 333–342.
[5] 余新桥, 梅捍卫, 罗利军, 刘国兰, 刘鸿艳, 邹桂花, 胡颂平, 李明寿, 吴金红. 干旱胁迫下水稻柱头外露率加性、上位性效应和Q×E互作的剖析. 遗传学报, 2006, 33(6): 542-550.
[6] 王成辉, 李思发, 刘志国, 项松平, 王剑, 潘增云, 段江. 红鲤生长性状的上位性遗传效应分析. 中国水产科学, 2006, 13(4): 573–578.
[7] 刘桂富, 杨剑, 徐海明, 朱军. 上位性和QTL×环境互作对水稻(Oryza sativa L.)抽穗期的影响. 遗传学报, 2007, 34(7): 608-615.
[8] 张坤普, 田纪春, 赵亮, 王珊珊. 利用DH群体进行小麦株高的加性效应、上位效应及环境互作效应的QTL分子标记定位. 遗传学报, 2008, 35(2): 119-127.
[9] Carlborg O, Kerje S, Schütz K, Jacobsson L, Jensen P, Andersson L. A global search reveals epistatic interaction between QTL for early growth in the chicken. Genome Res, 2003, 13(3): 413–421.
[10] Carlborg O, Jacobsson L, Ahgren P, Siegel P, Andersson L. Epistasis and the release of genetic variation during long-term selection. Nat Genet, 2006, 38(4): 418–420.
[11] Le Rouzic A, Siegel PB, Carlborg O. Phenotypic evolution from genetic polymorphisms in a radial network architec-ture. BMC Biol, 2007, 5: 50.
[12] Le Rouzic A, Alvarez-Castro JM, Carlborg O. Dissection of the genetic architecture of body weight in chicken re-veals the impact of epistasis on domestication traits. Genetics, 2008, 179(3): 1591–1599.
[13] Griffin H. Understanding genetic variation in fatness in chicken. Annual Report Roslin Inst, Edinburgh, UK, 1996.
[14] Wang HB, Li H, Wang QG, Zhang XY, Wang SZ, Wang YX, Wang XP. Profiling of chicken adipose tissue gene ex-pression by genome array. BMC Genomics, 2007, 8: 193.
[15] Li H, Wang HB, Li X, Wang QG. Genome-wide transcription analysis of genes expressed in chicken adipose tissue. In: The 23th World Poultry Congress. Brisbane, 2008.
[16] 王颖, 李辉. 鸡体脂性状QTL的研究进展. 东北农业大学学报, 2005, 36(1): 99–103.
[17] Abasht B, Dekkers JC, Lamont S. Review of quantitative trait loci identified in the chicken. Poult Sci, 2006, 85(12): 2079–2096. Erratum in: Poult Sci, 2007, 86(1): 206.
[18] Koning DJ, Hocking PM. Marker-assisted selection in poultry. In: Guimarães EP, Beate JR, Scherf D, Sonnino A, Dargie JD. Marker-Assisted Selection. Food And Agri-culture Organization of the United Nations, Rome, 2007, 185–198.
[19] Jennen D. Chicken fatness: from QTL to candidate gene. PhD thesis. Wageningen University, the Netherlands, 2004.
[20] Zhang S, Li H, Shi H. Single marker and haplotype analy-sis of the chicken Apolipoprotein B gene T123G and D9500D9-polymorphism reveals association with body growth and obesity. Poult Sci, 2006, 85(2): 178–184.
[21] Liu S, Wang SZ, Li ZH, Li H. Association of single nu-cleotide polymorphism of chicken uncoupling protein gene with muscle and fatness traits. J Anim Breed Genet, 2007, 124(4): 230–235.
[22] Mahley RW, Innerarity TL, Rall SC, Weisgraber KH. Plasma lipoproteins: apolipoprotein structure and function. Lipid Res J, 1984, 25(12): 1277–1294.
[23] Brown MS, Goldstein JLA. Receptor-mediated pathway for cholesterol homeostasis. Science, 1986, 232(4746): 34–47.
[24] 张森, 李辉. 载脂蛋白B研究进展. 国际遗传学杂志, 2006, 29(5): 364–367.
[25] Zhang S, Shi H, Li H. Cloning and tissue expression characteration of the chicken APOB gene. Anim Biotechnol, 2007, 18(4): 243–250.
[26] Lemieux S. Genetic susceptibility to visceral obesity and related clinical implications. Obes Relat Metab Disord, 1997, 21(10): 831–838. [27] Allan D, Sniderman MD. Non-HDL Chol
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