CTCF是脊椎动物关键的绝缘子蛋白,在细胞生命过程中发挥重要作用,敲除CTCF基因会导致小鼠胚胎死亡。为进一步探讨CTCF的功能,本文利用CRISPR/Cas9介导的同源重组,在内源性CTCF表达框上游敲入一个有丝分裂期降解结构域(Mitosis-special degradation domain, MD),该结构域可以带动CTCF融合蛋白在M期降解。作为对照,将MD结构域的第42位的精氨酸突变为丙氨酸,形成无降解活性的MD*,可使MD*-CTCF融合蛋白始终稳定存在。将嘌呤霉素与融合蛋白同时表达,即可利用抗生素筛选,高效地筛选到纯合克隆。利用蛋白印迹技术和免疫荧光检测3种细胞在不同细胞周期的CTCF蛋白变化情况,发现MD-CTCF细胞系CTCF蛋白含量约为野生型细胞的10%,MD*-CTCF细胞系的CTCF含量与野生型没有显著差别;通过流式细胞术观测降解CTCF对细胞的影响,发现MD-CTCF细胞系G1期明显延长。总之,利用CRISPR/Cas9技术在CTCF表达框上游高效地插入MD,首个CTCF特异性降解的人类细胞系获得成功构建。
[1] Phillips JE, Corces VG. CTCF: master weaver of the genome. Cell , 2009, 137(7): 1194-1211.
[2] Ong CT, Corces VG. CTCF: an architectural protein bridging genome topology and function. Nat Rev Genet , 2014, 15(4): 234-246.
[3] Cuddapah S, Jothi R, Schones DE, Roh TY, Cui KR, Zhao KJ. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res , 2009, 19(1): 24-32.
[4] Fire A, Xu SQ, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans . Nature , 1998, 391(6669): 806-811.
[5] Braasch DA, Corey DR. Novel antisense and peptide nucleic acid strategies for controlling gene expression. Biochemistry , 2002, 41(14): 4503-4510.
[6] Rakhit R, Navarro R, Wandless TJ. Chemical biology strategies for posttranslational control of protein function. Chem Biol , 2014, 21(9): 1238-1252.
[7] Kadauke S, Udugama MI, Pawlicki JM, Achtman JC, Jain DP, Cheng Y, Hardison RC, Blobel GA. Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1. Cell , 2012, 150(4): 725-737.
[8] Kim JH, Lee SR, Li LH, Park HJ, Park JH, Lee KY, Kim MK, Shin BA, Choi SY. High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice. PLoS One , 2011, 6(4): e18556.
[9] Gibson DG, Benders GA, Axelrod KC, Zaveri J, Algire MA, Moodie M, Montague MG, Venter JC, Smith HO, Hutchison CA. One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome. Proc Natl Acad Sci USA , 2008, 105(51): 20404-20409.
[10] Krentz NAJ, Nian CL, Lynn FC. TALEN/CRISPR-mediated eGFP knock-in add-on at the OCT4 locus does not impact differentiation of human embryonic stem cells towards endoderm. PLoS One , 2014, 9(12): e114275.
[11] Park A, Won ST, Pentecost M, Bartkowski W, Lee B. CRISPR/Cas9 allows efficient and complete knock-in of a destabilization domain-tagged essential protein in a human cell line, allowing rapid knockdown of protein function. PLoS One , 2014, 9(4): e95101.
[12] Nakatake Y, Fujii S, Masui S, Sugimoto T, Torikai-Nishikawa S, Adachi K, Niwa H. Kinetics of drug selection systems in mouse embryonic stem cells. BMC Biotech , 2013, 13(1): 64.
[13] Zheng W, Gu F. Progress of application and off-target effects of CRISPR/Cas9. Hereditas(Beijing) , 2015 37(10): 1003-1010. 郑武, 谷峰. CRISPR/Cas9的应用及脱靶效应研究进展. 遗传, 2015, 37(10): 1003-1010.
[14] Trevino AE, Zhang F. Chapter eight-Genome editing using Cas9 nickases. Methods Enzymol , 2014, 546: 161-174.
[15] Tsai SQ, Wyvekens N, Khayter C, Foden JA, Thapar V, Reyon D, Goodwin MJ, Aryee MJ, Joung JK. Dimeric CRISPR RNA-guided Fok I nucleases for highly specific genome editing. Nat Biotechnol , 2014, 32(6): 569-576.
[16] Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, Brancati F, Klopocki E, Horn D, Kayserili H, Opitz JM, Laxova R, Santos-Simarro F, Gilbert-Dussardier B, Wittler L, Borschiwer M, Haas SA, Osterwalder M, Franke M, Timmermann B, Hecht J, Spielmann M, Visel A, Mundlos S. Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions. Cell , 2015, 161(5): 1012-1025.
[17] Guo Y, Xu Q, Canzio D, Shou J, Li JH, Gorkin DU, Jung I, Wu HY, Zhai Y, Tang YX, Lu YC, Wu YH, Jia ZL, Li W, Zhang MQ, Ren B, Krainer AR, Maniatis T, Wu Q. CRISPR inversion of CTCF sites alters genome topology and enhancer/promoter function. Cell , 2015, 162(4): 900-910.
[18] Guo Y, Wu Q. Gene editing system inversion of CTCF binding sites alters chromatin topological architecture and enhancer/promoter function. Hereditas(Beijing) , 2015, 37(10): 1073-1074. 郭亚, 吴强. 采用DNA片段编辑技术反转CTCF 结合位点改变基因组拓扑结构和增强子与启动子功能. 遗传, 2015, 37(10): 1073-1074.
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