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增强子RNA研究现状

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  • 1 四川农业大学动物科技学院,成都 611130
    2 成都农业科技职业学院,成都 6111305
    3 四川省南江县农业局,巴中 635600
    4 贵州省畜牧兽医研究所,贵阳 550005

收稿日期: 2017-01-11

  修回日期: 2017-07-07

  网络出版日期: 2017-10-21

基金资助

四川省科技支撑计划项目(16ZC2838,2015NZ0013,2016NZ0089);四川省科技富民强县专项行动计划项目和四川省教育厅科研项目(16ZB0038)

The current research status of enhancer RNAs

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  • 1 College of Animal Science and Technology, Sichuan Agricultural University, Chengdu 611130, China
    2 Department of Animal Husbandry and Veterinary Medicine, Chengdu Agricultural College, Chengdu 611305, China
    3 Agricultural Bureau of Nanjiang Sichuan Province, Bazhong 635600, China
    4 Animal Husbandry and Veterinary Institute of Guizhou Province, Guiyang 550005, China

Received date: 2017-01-11

  Revised date: 2017-07-07

  Online published: 2017-10-21

Supported by

the Science and Technology Project of Sichuan Province(16ZC2838,2015NZ0013,2016NZ0089);the Technology Fumin County Special Action Plan Project of Sichuan Province and the Scientific Research Project of Sichuan Province Department of Education(16ZB0038)

摘要

增强子是真核生物基因表达调控的主要顺式作用元件,能有效促进基因表达。活化的增强子可以转录生成增强子RNA (enhancer RNAs, eRNAs),其合成受到信号系统和信号转录因子的约束。eRNAs与其他转录本(如lncRNAs和mRNAs)相比,其长度更短、稳定性更差、组织特异性更强。此外,eRNAs对增强子与启动子之间的染色质环(looping)的形成和稳定有一定的作用,并能促进靶基因的表达。目前,越来越多的研究发现eRNAs在发育和疾病发生等生物学过程中扮演着重要角色,但是其功能研究一直进展缓慢,调控机制尚不清楚。本文概述了eRNAs的特征、研究方法和功能特性,探讨了eRNAs作为潜在治疗靶标的可能性,以期为eRNAs的后续研究提供参考。

本文引用格式

程霄,杨琼,谭镇东,谭娅,蒲红州,赵雪,张顺华,朱砺 . 增强子RNA研究现状[J]. 遗传, 2017 , 39(9) : 784 -797 . DOI: 10.16288/j.yczz.17-010

Abstract

Enhancers are key cis-acting gene regulatory elements in eukaryotes, which can effectively promote the expression of target genes. Emerging evidence showed that enhancers in activation state could be transcribed to enhancer RNAs (eRNAs), the processes of which are regulated by various signaling systems and actions of signal-dependent transcription factors. Compared with the other transcripts (e.g. lncRNA, mRNA), eRNAs have shorter sequences, lower stability, and higher tissue specificity. eRNAs play roles in the initiation or stabilization of enhancer-promoter looping, and promote the expression of target genes. Recent studies have further showed that eRNAs have crucial roles in biological processes, such as development and disease initiation and progression. However, functional studies of eRNAs are currently lacking, and the regulatory mechanisms of eRNAs are still uncertain. Herein, we focus on the features, research methods and functional properties of eRNAs, and discusse the possibility of using eRNAs as therapeutic targets. We hope this discussion might provide some insights for further research on eRNAs.

参考文献

[1] Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang QB, Bekiranov S, Sementchenko V, Fox EA, Silver PA, Gingeras TR, Liu XS, Brown M. Genome-wide analysis of estrogen receptor binding sites. Nat Genet, 2006, 38(11): 1289-1297.
[2] Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA. Interchromosomal associations between alternatively expressed loci. Nature, 2005, 435(7042): 637-645.
[3] Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, Sementchenko V, Piccolboni A, Bekiranov S, Bailey DK, Ganesh M, Ghosh S, Bell I, Gerhard DS, Gingeras TR. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science, 2005, 308(5725): 1149-1154.
[4] Natoli G, Andrau JC. Noncoding transcription at enhancers: general principles and functional models. Annu Rev Genet, 2012, 46: 1-19.
[5] Shlyueva D, Stampfel G, Stark A. Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet, 2014, 15(4): 272-286.
[6] Banerji J, Rusconi S, Schaffner W. Expression of a β-globin gene is enhanced by remote SV40 DNA sequences. Cell, 1981, 27(2 pt 1): 299-308.
[7] Gillies SD, Morrison SL, Oi VT, Tonegawa S. A tissue- specific transcription enhancer element is located in the major intron of a rearranged immunoglobulin heavy chain gene. Cell, 1983, 33(3): 717-728.
[8] Banerji J, Olson L, Schaffner W. A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes. Cell, 1983, 33(3): 729-740.
[9] Bulger M, Groudine M. Functional and mechanistic diversity of distal transcription enhancers. Cell, 2011, 144(3): 327-339.
[10] Levine M. Transcriptional enhancers in animal development and evolution. Curr Biol, 2010, 20(17): R754-R763.
[11] Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science, 1998, 281(5373): 60-63.
[12] Buecker C, Wysocka J. Enhancers as information integration hubs in development: lessons from genomics. Trends Genet, 2012, 28(6): 276-284.
[13] Xie W, Ren B. Developmental biology. Enhancing pluripotency and lineage specification. Science, 2013, 341(6143): 245-247.
[14] Spitz F, Furlong EEM. Transcription factors: from enhancer binding to developmental control. Nat Rev Genet, 2012, 13(9): 613-626.
[15] Calo E, Wysocka J. Modification of enhancer chromatin:
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