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马属动物全基因组高通量测序研究进展

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  • 内蒙古农业大学动物科学学院,内蒙古自治区马属动物遗传育种与繁殖学重点实验室,呼和浩特 010018
白东义,博士,讲师,研究方向:马属动物遗传育种与繁殖。E-mail: baidongyi1983@163.com|芒来,双博士,教授,研究方向:马属动物遗传育种与繁殖。E-mail: dmanglai@163.com

收稿日期: 2017-03-31

  修回日期: 2017-11-07

  网络出版日期: 2017-12-20

基金资助

国家自然科学基金项目(31472070,31360538);内蒙古自治区自然科学基金重大项目(2017ZD06);内蒙古自治区自然科学基金项目(Natural Science Foundation of Inner Mongolia);内蒙古自治区科学技术厅建设项目(201603002)

Progress in the whole genome of Equus by using high-throughput sequencing technologies

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  • Inner Mongolia Equus Genetics, Breeding and Reproduction Key Laboratory, College of Animal Science, Inner Mongolia Agri-cultural University, Hohhot 010018, China

Received date: 2017-03-31

  Revised date: 2017-11-07

  Online published: 2017-12-20

Supported by

the National Natural Science Foundation of China(31472070,31360538);Natural Science Foundation Major Project of Inner Mongolia(2017ZD06);2015BS0318(Natural Science Foundation of Inner Mongolia);Inner Mongolia Science and Technology Department Construction Project(201603002)

摘要

马属(Equus)动物的祖先大约在5500万年前出现,经过持续分化形成现今的马、驴和斑马,统称马属动物。马作为家畜中的重要一员,是推动人类文明发展的载体,在人类的饮食、战争、农耕、运输和娱乐等领域做出了巨大贡献。然而,人类为了满足需求,或多或少影响着马的进化方向,从而在长时间自然和人工选择过程中形成了多种独具特色性状的不同马种。驴和骡在全球的存栏量也较多,在人类的生产和生活中起到的作用同样不可忽视,不但为人类提供了生产力而且还提供了食物和营养保健品。可见,马属动物对人类的重要性。近年来,高通量测序技术和生物信息学分析方法被广泛运用于家畜的遗传学研究。人们利用高通量测序手段探索马属动物在进化过程中的种群变化历史,解析形成独特性状的分子机制,为其育种工作提供有效的数据支持。本文综述了马属动物全基因组高通量测序的研究进展,以及利用该技术在马属动物的进化历史和功能基因挖掘研究领域所取得的成就,以期今后对马属动物的深入研究、产业开发和利用等方面提供参考信息。

本文引用格式

白东义, 赵一萍, 李蓓, 格日乐其木格, 张心壮, 芒来 . 马属动物全基因组高通量测序研究进展[J]. 遗传, 2017 , 39(11) : 974 -983 . DOI: 10.16288/j.yczz.17-122

Abstract

The ancestors of the Equus lived on earth about 55 million years ago, and then they diverged and evolved into modern horses, donkeys and zebras. Equus is indispensable for human lives. Horses are key members of the livestock, domesticated for farming, transportation, recreation as well as food supply and warfare, thereby enhancing the development of human civilization. In the meantime, humans also influence horses’ evolution to meet their own demands, resulting in lots of different horse breeds with specific traits after a prolonged natural and artificial selection. Besides horses, donkeys and mules in the Equus genus also benefit human lives, providing essential work force and also food and nutrition products. The advent of the high-throughput sequencing technologies and bioinformatics analysis has transformed the genetics research of the livestock. In this review, we summarize research progress in the whole genome of Equus by using high-throughput sequencing technologies. Moreover, we describe the achievements on evolution history and functional gene research of Equus using the technology. We look forward to providing further insights for better industrialization and utilization of Equus.

参考文献

[1] Nowak RM. Walker's mammals of the world. Baltimore: Johns Hopkins University Press, 1999: 161-192.
[2] Simpson GG. The major features of evolution. New York: Columbia Univ. Press, 1953: 87.
[3] Semprebon GM, Rivals F, Solounias N, Hulbert RC Jr. Paleodietary reconstruction of fossil horses from the Eocene through Pleistocene of North America. Palaeogeogr, Palaeoclimatol, Palaeoecol, 2015, 442: 110-127.
[4] Orlando L. Equids. Curr Biol, 2015, 25(20): R973-R978.
[5] Mihlbachler MC, Rivals F, Solounias N, Semprebon GM . Dietary change and evolution of horses in North America. Science, 2011, 331(6021): 1178-1181.
[6] MacFadden BJ. Evolution. Fossil horses--evidence for evolution. Science, 2005, 307(5716): 1728-1730.
[7] Salesa MJ, Sánchez IM . Presence of the Asian horse sinohippus in the miocene of Europe. Acta Palaeontol Polon, 2004, 49(2): 189-196.
[8] Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka JL, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E, Orlando L. Speciation with gene flow in equids despite extensive chromosomal plasticity. Proc Natl Acad Sci USA, 2014, 111(52): 18655-18660.
[9] Guthrie RD. New carbon dates link climatic change with human colonization and Pleistocene extinctions. Nature, 2006, 441(7090): 207-209.
[10] Xu XF, Gullberg A, Arnason U. The complete mitochondrial DNA (mtDNA) of the donkey and mtDNA comparisons among four closely related mammalian species-pairs. J Mol Evol, 1996, 43(5): 438-446.
[11] Huelsenbeck JP, Larget B, Swofford D. A compound poisson process for relaxing the molecular clock. Genetics, 2000, 154(4): 1879-1892.
[12] Nikaido M, Kawai K, Cao Y, Harada M, Tomita S, Okada N, Hasegawa M. Maximum likelihood analysis of the complete mitochondrial genomes of eutherians and a reevaluation of the phylogeny of bats and insectivores. J Mol Evol, 2001, 53(4-5): 508-516.
[13] Waddell PJ, Cao Y, Hasegawa M, Mindell DP. Assessing the cretaceous superordinal divergence times within birds and placental mammals by using whole mitochondrial protein sequences and an extended statistical framework. Syst Biol, 1999, 48(1): 119-137.
[14] Der Sarkissian C, Vilstrup JT, Schubert M, Seguin-Orlando A, Eme D, Weinstock J, Alberdi MT, Martin F, Lopez PM, Prado JL, Prieto A, Douady CJ, Stafford TW, Willerslev E, Orlando L. Mitochondrial genomes reveal the extinct Hippidion as an ou
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