收稿日期: 2019-05-22
修回日期: 2019-09-22
网络出版日期: 2019-10-09
基金资助
国家自然科学基金项目编号:(31660639);国家自然科学基金项目编号:(31860637);国家自然科学基金项目编号:(31860628);国家绒毛用羊产业技术体系项目编号:(CARS-39-06);内蒙古自然科学基金项目编号:(2017MS0304);内蒙古农业大学“双一流”学科创新团队建设人才培育项目资助编号:(NDSC2018-01)
Progress in goat genome studies
Received date: 2019-05-22
Revised date: 2019-09-22
Online published: 2019-10-09
Supported by
Supported by the National Natural Science Foundation of China Nos.(31660639);Supported by the National Natural Science Foundation of China Nos.(31860637);Supported by the National Natural Science Foundation of China Nos.(31860628);China Agriculture Research System No.(CARS-39-06);Inner Mongolia Natural Science Foundation No.(2017MS0304);Cultivation of Talents for "Double- first-class" Discipline Innovation Team Construction in Inner Mongolia Agricultural University No.(NDSC2018-01)
王凤红,张磊,李晓凯,范一星,乔贤,龚高,严晓春,张令天,王志英,王瑞军,刘志红,王志新,何利兵,张燕军,李金泉,赵艳红,苏蕊 . 山羊基因组研究进展[J]. 遗传, 2019 , 41(10) : 928 -938 . DOI: 10.16288/j.yczz.19-147
The goat genome is the research basis for the protection and utilization of goat resources, which is important for breeding and improving goat breeds. At present, with the continuous improvement of goat reference genome, various important research progress in goat origin, evolution and adaptability has been achieved. In this review, we summarize the research progress in the goat genome in detail, encompassing goat genome structure, genome map (genetic, physical and comparative maps), goat high throughput sequencing and SNP chip development. We aim to provide a theoretical foundation for the development of goat genome selection.
Key words: goat; genome structure; genome map; chip; genome selection
| [1] | Lockhart DJ, Winzeler EA . Genomics, gene expression and DNA arrays. Nature, 2000,405(6788):827-836. |
| [2] | Reilly MC, Kim J, Lynn J, Simmons BA, Gladden JM, Magnuson JK, Baker SE . Forward genetics screen coupled with whole-genome resequencing identifies novel gene targets for improving heterologous enzyme production in Aspergillus niger. Appl Microbiol Biotechnol, 2018,102(4):1797-1807. |
| [3] | Groenen MA . A decade of pig genome sequencing: a window on pig domestication and evolution. Genet Sel Evol, 2016,48(1):1-9. |
| [4] | Dürig N, Jude R, Holl H, Brooks SA, Lafayette C, Jagannathan V, Leeb T . Whole genome sequencing reveals a novel deletion variant in the KIT gene in horses with white spotted coat colour phenotypes. Anim Genet, 2017,48(4):483-485. |
| [5] | Mielczarek M, Fr?szczak M, Giannico R, Minozzi G, Williams JL, Wojdak-maksymiec K, Szyda J . Analysis of copy number variations in Holstein-Friesian cow genomes based on whole-genome sequence data. J Dairy Sci, 2017,100(7):5515-5525. |
| [6] | Colli L, Lancioni H, Cardinali I, Olivieri A, Capodiferro MR, Pellecchia M, Rzepus M, Zamani W, Naderi S, Gandini F, Vahidi SMF, Agha S, Randi E, Battaglia V, Sardina MT, Portolano B, Rezaei HR, Lymberakis P, Boyer F, Coissac E, Pompanon F, Taberlet P, Ajmone Marsan P, Achilli A . Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability. BMC Genomics, 2015,16(1):1-12. |
| [7] | Okpeku M, Esmailizadeh A, Adeola AC, Shu L, Zhang Y, Wang Y, Sanni TM, Imumorin IG, Peters SO, Zhang J, Dong Y, Wang W . Genetic variation of goat interferon regulatory factor 3 gene and its implication in goat evolution. PLoS One, 2016,11(9):e0161962. |
| [8] | Daly KG, Maisano Delser P, Mullin VE, Scheu A, Mattiangeli V, Teasdale MD, Hare AJ, Burger J, Verdugo MP, Collins MJ, Kehati R, Erek CM, Bar-Oz G, Pompanon F, Cumer T, ?ak?rlar C, Mohaseb AF, Decruyenaere D, Davoudi H, ?evik ?, Rollefson G, Vigne JD, Khazaeli R, Fathi H, Doost SB, Rahimi Sorkhani R, Vahdati AA, Sauer EW, Azizi Kharanaghi H, Maziar S, Gasparian B, Pinhasi R, Martin L, Orton D, Arbuckle BS, Benecke N, Manica A, Horwitz LK, Mashkour M, Bradley DG . Ancient goat genomes reveal mosaic domestication in the Fertile Crescent. Science, 2018,361(6397):85-88. |
| [9] | Dangi SS, Gupta M, Dangi SK, Chouhan VS, Maurya VP, Kumar P, Singh G, Sarkar M . Expression of HSPs: an adaptive mechanism during long-term heat stress in goats (Capra hircus). Int J Biometeorol, 2015,59(8):1095-1106. |
| [10] | Guan D, Luo N, Tan X, Zhao Z, Huang Y, Na R, Zhang J, Zhao Y . Scanning of selection signature provides a glimpse into important economic traits in goats (Capra hircus). Sci Rep, 2016,6:36372. |
| [11] | Zeder MA, Hesse B . The initial domestication of goats (Capra hircus) in the Zagros mountains 10, 000 years ago. Science, 2000,287(5461):2254-2257. |
| [12] |