Prime editing引导植物基因组精确编辑新局面
收稿日期: 2020-05-02
修回日期: 2020-05-20
网络出版日期: 2020-05-28
基金资助
国家转基因专项资助编号(2019ZX08010003-001-008);国家转基因专项资助编号(2016ZX08010-002-008)
Prime editing creates a novel dimension of plant precise genome editing
Received date: 2020-05-02
Revised date: 2020-05-20
Online published: 2020-05-28
Supported by
Supported by the Genetically Modified Breeding Major Projects Nos(2019ZX08010003-001-008);Supported by the Genetically Modified Breeding Major Projects Nos(2016ZX08010-002-008)
由于植物细胞内同源重组频率较低、供体传递受限等原因,对植物基因组进行精准编辑十分困难。近期,中国科学院遗传与发育生物学研究所高彩霞团队构建了适用于植物的引导编辑器(plant prime editor, PPE)系统,并在重要作物水稻和小麦中完成了引导编辑。该系统不产生DNA双链断裂,仍可高度准确实现所有可能的12种单碱基替换、多碱基替换及片段缺失插入,从而为植物基因组精确编辑提供了多用途工具。本文介绍了PPE的组成结构和编辑能力,同时也结合其他研究组随后发表的报告综述了植物引导编辑器的优化探索,为合理使用PPEs和继续开展优化工作提供帮助。
秦瑞英, 魏鹏程 . Prime editing引导植物基因组精确编辑新局面[J]. 遗传, 2020 , 42(6) : 519 -523 . DOI: 10.16288/j.yczz.20-125
The precise genome editing has not been well established in plants, largely because of the limited frequency of homology recombination and the delivery barrier of donor templates. Recently, Dr. Caixia Gao’s group from the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, developed a series of plant prime editors (PPEs), which mediats the prime editing in the genomes of rice and wheat. The PPE systems are able to generate all 12 kinds of programmable base substitutions, as well desired multiplex nucleotide substitutions and small deletions or insertions without DNA double-strand breaks, thus providing versatile tools for precise plant genome editing. Herein, we introduce the structure and the editing capacity of the PPEs. The attemp on efficiency enhancements of PPEs and other PPEs are also discussed, which may provide a reference for appropriate application of PPEs in plants and also for continuous optimization of the editing tools.
Key words: prime editing; precise editing; CRISPR; genome editing; crop
| [1] | Chen KL, Wang YP, Zhang R, Zhang HW, Gao CX . CRISPR/Cas genome editing and precision plant breeding in agriculture. Annu Rev Plant Bio, 2019,70:667-697. |
| [2] | Sun YW, Li JY, Xia LQ . Precise genome modification via sequence-specific nucleases-mediated gene targeting for crop improvement. Front Plant Sci, 2016,7:1928. |
| [3] | Lin QP, Zong Y, Xue CX, Wang SX, Jin S, Zhu ZX, Wang YP, Anzalone AV, Raguram A, Doman JL, Liu DR, Gao CX . Prime genome editing in rice and wheat. Nat Biotechnol, 2020,38:582-585. |
| [4] | Zong Y, Gao CX . Progress on base editing systems. Hereditas(Beijing), 2019,41(9):777-800. |
| [4] | 宗媛, 高彩霞 , 碱基编辑系统研究进展. 遗传, 2019,41(9):777-800. |
| [5] | Rees HA, Liu DR . Base editing: precision chemistry on the genome and transcriptome of living cells. Nat Rev Genet, 2018,19(12):770-788. |
| [6] | Jin S, Zong Y, Gao Q, Zhu ZX, Wang YP, Qin P, Liang CZ, Wang DW, Qiu JL, Zhang F, Gao CX . Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice. Science, 2019 364(6437):292-295. |
| [7] | Zuo EW, Sun YD, Wei W, Yuan TL, Ying WQ, Sun H, Yuan LY, Steinmetz LM, Li YX, Yang H . Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos. Science, 2019,364(6437):289-292. |
| [8] | Anzalone AV, Randolph PB, Davis JR, Sousa AA, Koblan LW, Levy JM, Chen PJ, Wilson C, Newby GA, Raguram A, Liu DR . Search-and-replace genome editing without double-strand breaks or donor DNA. Nature, 2019,576(7785):149-157. |
| [9] | Butt H, Rao GS, Sedeek K, Aman R, Kamel R, Mahfouz M. Engineering herbicide resistance via prime editing in rice. Plant Biotechnol J, 2020, https://doi.org/10.1111/pbi.13399 . |
| [10] | Hua K, Jiang YW, Tao XP, Zhu JK. Precision genome engineering in rice using prime editing system. Plant Biotechnol J, 2020, https://doi.org/10.1111/pbi.13395 . |
| [11] | Li HY, Li JY, Chen JL, Yan L, Xia LQ . Precise modifications of both exogenous and endogenous genes in rice by prime editing. Mol Plant, 2020, https://doi.org/10.1016/j.molp.2020.03.011 . |
| [12] | Tang X, Sretenovic S, Ren QR, Jia XY, Li MK, Fan TT, Yin DS, Xiang SY, Guo YC, Liu L, Zheng XL, Qi YP, Zhang Y . Plant prime editors enable precise gene editing in rice cells. Mol Plant, 2020,13(5):667-670. |
| [13] | Xu RF, Li J, Liu XH, Shan TF, Qin RY, Wei PC . Development of plant prime-editing systems for precise genome editing. Plant Commun, 2020, . |
| [14] | Xu W, Zhang CW, Yang YX, Zhao S, Kang GT, He XQ, Song JL, Yang JX . Versatile nucleotides substitution in plant using an improved prime editing system. Mol Plant, 2020,13(5):675-678. |
| [15] | Koblan LW, Doman JL, Wilson C, Levy JM, Tay T, Newby GA, Maianti JP, Raguram A, Liu DR . Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction. Nat Biotechnol, 2018,36(9):843-846. |
| [16] | Tang X, Zheng XL, Qi YP, Zhang DW, Cheng Y, Tang AT, Voytas DF, Zhang Y . A single transcript CRISPR-Cas9 system for efficient genome editing in plants. Mol Plant, 2016,9(7):1088-1091. |
| [17] | Xie KB, Minkenberg B, Yang YN . Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc Natl Acad Sci USA, 2015,112(11):3570-3575. |
| [18] | Li J, Qin RY, Zhang YD, Xu SB, Liu XS, Yang JB, Zhang XQ, Wei PC. Optimizing plant adenine base editor systems by modifying the transgene selection system. Plant Biotechnol J, 2019, . |
| [19] | Xu W, Yang YX, Liu Y, Kang GT, Wang FP, Li L, Lv XX, Zhao S, Yuan S, Song JL, Wu Y, Feng F, He XQ, Zhang CW, Song W, Zhao JR, Yang JX . Discriminated sgRNAs- based SurroGate system greatly enhances the screening efficiency of plant base-edited cells. Mol Plant, 2020,13(5):169-180. |
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