研究报告

Bcl-2基因功能与灵长类体型大小的适应性进化研究

展开
  • 昆明理工大学灵长类转化医学研究院昆明 650500
李润,硕士研究生,专业方向:遗传多样性与疾病。E-mail: 2805214365@qq.com
石宏,博士,教授,研究方向:遗传多样性与疾病。E-mail: shih@kust.edu.cn

收稿日期: 2025-04-11

  修回日期: 2025-06-26

  网络出版日期: 2025-07-22

基金资助

现场物证溯源技术国家工程实验室开放课题(2018NELKFKT15)

Function of Bcl-2 gene and its mechanism on body size adaptive evolution in primates

Expand
  • Institute of Primate Translational Medicine, Kunming University of Science and Technology, Kunming 650500, China

Received date: 2025-04-11

  Revised date: 2025-06-26

  Online published: 2025-07-22

Supported by

Open Project of National Engineering Laboratory for Forensic Science(2018NELKFKT15)

摘要

不同灵长类物种中存在体型上的显著差异,为探究影响灵长类体型演化的相关基因,选取6种体型差异显著的灵长类物种,通过比较基因组、分子进化和转录组学的分析手段筛选到Bcl-2基因对灵长类体型有显著的影响。结果显示,Bcl-2基因表达量与体型大小呈正相关,并且其在不同体型物种中经历了差异化的自然选择。群体遗传分析发现,Bcl-2特定SNP位点与体型进化相关,细胞实验证实该基因通过调控Wnt/β-catenin和BMP等通路影响成骨细胞增殖。多组学综合分析还表明,Bcl-2表达水平随体型增大而升高,在体型差异大的物种间表现出显著的选择信号和理化性质差异。基因功能研究表明,Bcl-2通过调控骨骼发育相关通路在体型演化中发挥关键作用。本研究揭示了Bcl-2作为关键调控因子,通过影响细胞凋亡、骨骼发育和代谢等过程参与灵长类体型适应性进化。本研究从进化遗传学角度揭示了导致灵长类体型差异的分子机制,为理解灵长类体型演化提供了新见解。

本文引用格式

李润, 石宏 . Bcl-2基因功能与灵长类体型大小的适应性进化研究[J]. 遗传, 2025 , 47(11) : 1231 -1243 . DOI: 10.16288/j.yczz.25-101

Abstract

Significant body size variations exist among different primate species. To investigate the genes influencing primate body size evolution, this study employed evolutionary genetics approaches to analyze functional differences and natural selection patterns of genes across species with distinct body sizes. Six primate species representing significant size variations were selected. Through comparative analysis of genome, molecular evolution and RNA-seq, Bcl-2 gene was detected and it has a significant impact on primate body size. Results demonstrated a positive correlation between Bcl-2 gene expression levels with body size, with differential natural selection observed among species of varying sizes. Population genetic analysis identified specific Bcl-2 SNP loci associated with body size evolution, and cellular experiments confirmed that this gene regulates osteoblast proliferation through pathways such as Wnt/β-catenin and BMP signaling. Multi-omics analysis further revealed that Bcl-2 expression increases with body size and exhibits significant selection signals and physicochemical property differences between species with substantial size variations. Functional studies indicated that Bcl-2 plays a crucial role in body size evolution by regulating skeletal development-related pathways. This study systematically reveals Bcl-2 as a key regulatory factor influencing primate adaptive body size evolution through processes such as apoptosis, skeletal development, and metabolism. From an evolutionary genetics perspective, it elucidates the molecular mechanisms underlying body size differences, providing new insights into primate body size evolution.

参考文献

[1] Smith RJ, Jungers WL. Body mass in comparative primatology. J Hum Evol, 1997, 32(6): 523-559.
[2] Fleagle JG, Baden AL, Gilbert CC. Primate adaptation and evolution. New York: Academic Press, 2024.
[3] Kamilar JM, Cooper N. Phylogenetic signal in primate behaviour, ecology and life history. Philos Trans R Soc Lond B Biol Sci, 2013, 368(1618): 20120341.
[4] Isbell LA. Predation on primates: ecological patterns and evolutionary consequences. Evol Anthropol, 1994, 3(2): 61-71.
[5] Koziowski J, Weiner J. Interspecific allometries are by- products of body size optimization. Am Nat, 1997, 149(2): 352-380.
[6] Salazar VS, Gamer LW, Rosen V. BMP signalling in skeletal development, disease and repair. Nat Rev Endocrinol, 2016, 12(4): 203-221.
[7] Zhang S, Fantozzi I, Tigno DD, Yi ES, Platoshyn O, Thistlethwaite PA, Kriett JM, Yung G, Rubin LJ, Yuan JX. Bone morphogenetic proteins induce apoptosis in human pulmonary vascular smooth muscle cells. Am J Physiol Lung Cell Mol Physiol, 2003, 285(3): L740-L754.
[8] Heubel B, Nohe A. The role of BMP signaling in osteoclast regulation. J Dev Biol, 2021, 9(3): 24.
[9] Morikawa Y, Zehir A, Maska E, Deng CX, Schneider MD, Mishina Y, Cserjesi P. BMP signaling regulates sympathetic nervous system development through Smad4-dependent and-independent pathways. Development, 2009, 136(21): 3575-3584.
[10] Clevers H. Wnt/β-catenin signaling in development and disease. Cell, 2006, 127(3): 469-480.
[11] Regard JB, Zhong ZD, Williams BO, Yang YZ. Wnt signaling in bone development and disease: making stronger bone with Wnts. Cold Spring Harb Perspect Biol, 2012, 4(12): a007997.
[12] Polakis P. Wnt signaling and cancer. Gene Dev, 2000, 14(15): 1837-1851.
[13] Macsai CE, Foster BK, Xian CJ. Roles of Wnt signalling in bone growth, remodelling, skeletal disorders and fracture repair. J Cell Physiol, 2008, 215(3): 578-587.
[14] Sun PC, Jiao BB, Yang YZ, Shan LX, Li T, Li XN, Xi ZX, Wang XY, Liu JQ. WGDI: a user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes. Mol Plant, 2022, 15(12): 1841-1851.
[15] Andrews S. FastQC: a quality control tool for high throughput sequence data. Babraham Bioinformatics. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Berlin, Germany, 2010.
[16] Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 2014, 30(15): 2114-2120.
[17] Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods, 2015, 12(4): 357-360.
[18] Liao Y, Smyth GK, Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics, 2014, 30(7): 923-930.
[19] Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol, 2004, 3: Article 3.
[20] Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics, 2008, 9: 559.
[21] Yu GC, Wang LG, Han YY, He QY. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS, 2012, 16(5): 284-287.
[22] Kumar S, Tamura K, Nei M. MEGA: molecular evolutionary genetics analysis software for microcomputers. Comput Appl Biosci, 1994, 10(2): 189-191.
[23] Yang ZH. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol, 2007, 24(8): 1586-1591.
[24] Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Gene set enrichment analysis: a knowledge-based approach for interpreting genome- wide expression profiles. Proc Natl Acad Sci USA, 2005, 102(43): 15545-15550.
[25] Lowery JW, Rosen V. The BMP pathway and its inhibitors in the skeleton. Physiol Rev, 2018, 98(4): 2431-2452.
[26] Wu MR, Chen GQ, Li YP. TGF-β and BMP signaling in osteoblast, skeletal development, and bone formation, homeostasis and disease. Bone Res, 2016, 4: 16009.
[27] Vogler M. Targeting BCL2-proteins for the treatment of solid tumours. Adv Med, 2014, 2014: 943648.
[28] Devi K, Shanmugarajan TS. Therapeutic potential of plant metabolites in bone apoptosis: a review. Curr Drug Targets, 2023, 24(11): 857-869.
[29] Trisciuoglio D, Iervolino A, Zupi G, Del Bufalo D. Involvement of PI3K and MAPK signaling in Bcl-2- induced vascular endothelial growth factor expression in melanoma cells. Mol Biol Cell, 2005, 16(9): 4153-4162.
[30] Ampuja M, Jokimäki R, Juuti-Uusitalo K, Rodriguez- Martinez A, Alarmo EL, Kallioniemi A. BMP4 inhibits the proliferation of breast cancer cells and induces an MMP-dependent migratory phenotype in MDA-MB-231 cells in 3D environmen. BMC Cancer, 2013, 13: 429.
[31] Zhao XD, Sun Q, Dou CW, Chen QX, Liu BH. BMP4 inhibits glioblastoma invasion by promoting E-cadherin and claudin expression. Front Biosci (Landmark Ed), 2019, 24(6): 1060-1070.
[32] Li XH, Peng J, Wu MX, Ye HZ, Zheng CS, Wu GW, Xu HF, Chen XZ, Liu XX. BMP2 promotes chondrocyte proliferation via the Wnt/β-catenin signaling pathway. Mol Med Rep, 2011, 4(4): 621-626.
[33] Zhou N, Li Q, Lin X, Hu N, Liao JY, Lin LB, Zhao C, Hu ZM, Liang X, Xu W, Chen H, Huang W. BMP2 induces chondrogenic differentiation, osteogenic differentiation and endochondral ossification in stem cells. Cell Tissue Res, 2016, 366(1): 101-111.
[34] Wang NS, Unkila MT, Reineks EZ, Distelhorst CW. Transient expression of wild-type or mitochondrially targeted Bcl-2 induces apoptosis, whereas transient expression of endoplasmic reticulum-targeted Bcl-2 is protective against Bax-induced cell death. J Biol Chem, 2001, 276(47): 44117-44128.
[35] Zuo JH, Ishikawa T, Boutros S, Xiao ZQ, Humtsoe JO, Kramer RH. Bcl-2 overexpression induces a partial epithelial to mesenchymal transition and promotes squamous carcinoma cell invasion and metastasis. Mol Cancer Res, 2010, 8(2): 170-182.
[36] Ito T, Hotta T. Overexpression of Bcl-2 suppresses apoptotic cell death of the human leukemic cell line TF-1. Nihon Rinsho, 1996, 54(7): 1815-1821.
文章导航

/