[1] | Hu J, He YQ . A demand of agricultural development for crop functional genomics research. Chin Bull Life Sci, 2016: 28(10):1103-1111. | [1] | 胡杰, 何予卿 . 农业发展对作物功能基因组研究需求. 生命科学, 2016,28(10):1103-1111. | [2] | Yu J, Hu SN, Wang J, Wong GK-S, Li SG, Liu B, Deng Y, Dai L, Zhou Y, Zhang XQ, Cao M, Liu J, Sun JD, Tang JB, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng JN, Han YJ, Li L, Li W, Hu GQ, Huang XG, Li W, Li J, Liu ZW, Li L, Liu J, Qi Q, Liu JS, Li L, Li T, Wang X, Lu H, Wu TT, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li XR, Wang H, Xu X, Zhai WX, Xu Z, Zhang J, He S, Zhang JG, Xu JC, Zhang K, Zheng X, Dong JH, Zeng WY, Tao L, Ye J, Tan J, Ren XD, Chen X, He J, Liu DF, Tian W, Tian C, Xia H, Bao QY, Li G, Gao H, Cao T, Wang J, Zhao WM, Li P, Chen W, Wang XD, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li ZJ, Mao L, Zhou C, Zhu Z, Chen RS, Hao BL, Zheng W, Chen S, Guo W, Li G J, Liu S, Tao M, Wang J, Zhu LH, Yuan L, Yang H . A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science, 2002,296(5565):79-92. | [3] | Zhang JW, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li WM, Song JM, Xie WB, Lee SH, Talag J, Shao L, An Y, Zhang C L, Ouyang YD, Sun S, Jiao WB, Lv F, Du BG, Luo MZ, Maldonado CE, Goicoechea JL, Xiong LZ, Wu CY, Xing YZ, Zhou DX, Yu SB, Zhao Y, Wang GW, Yu Y, Luo YJ, Zhou ZW, Hurtado BE, Danowitz A, Wing RA, Zhang QF . Extensive sequence divergence between the reference genomes of two elitendica rice varieties Zhenshan 97 and Minghui 63. Proc Natl Acad Sci USA, 2016,113(35):E5163-E5171. | [4] | Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009,326(5956):1112-1115. | [5] | Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA . Genome sequence of the palaeopolyploid soybean. Nature, 2010,463(7278):178-183. | [6] | Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, Fan H, Li D, Dong L, Tao Y, Gao C, Wu H, Li Y, Cui Y, Guo X, Zheng S, Wang B, Yu K, Liang Q, Yang W, Lou X, Chen J, Feng M, Jian J, Zhang X, Luo G, Jiang Y, Liu J, Wang Z, Sha Y, Zhang B, Wu H, Tang D, Shen Q, Xue P, Zou S, Wang X, Liu X, Wang F, Yang Y, An X, Dong Z, Zhang K, Zhang X, Luo MC, Dvorak J, Tong Y, Wang J, Yang H, Li Z, Wang D, Zhang A, Wang J . Draft genome of the wheat A-genome progenitor Triticum urartu. Nature, 2013,496(7443):87-90. | [7] | Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu P, Wang J, Zou H, Zhang R, Xu J, Gao J, Middleton C, Quan Z, Liu G, Wang J; International Wheat Genome Sequencing Consortium, Yang H, Liu X, He Z, Mao L, Wang J. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 2013,496(7443):91-95. | [8] | Lin H . Metabolomic analysis of 29 Soybean varieties and establish of plant seeds molecular characteristics reference database[Dissertation]. Shanghai Normal University, 2013. | [8] | 林泓 . 29个大豆品种代谢组学分析及植物分子特征数据库的建立[学位论文]. 上海师范大学, 2013. | [9] | Qin YX, Yang XC, Li H . Reform and thinking on teaching of genomics. Educ Teach Forum, 2016,48:223-224. | [9] | 秦余香, 杨新超, 李慧 . 基因组学教学改革与思考. 教育教学论坛, 2016,48:223-224. | [10] | Huang XH, Zhao Y, Wei XH, Li CY, Wang AH, Zhao Q, Li WJ, Guo YL, Deng LW, Zhu CR, Fan DL, Lu YQ, Weng QJ, Liu KY, Zhou TY, Jing YF, Si LZ, Dong GJ, Huang T, Lu TT, Feng Q, Qian Q, Li JY, Han B . Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet, 2012,44(1):32-39. | [11] | Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D. Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet, 2012,44(7):803-807. | [12] | 凌宏清 . 小麦基因组测序研究进展与未来发展趋势. 见:第七届全国小麦遗传育种学术研讨会, 2015. | [13] | Li AL, Kong XY, Zhou RH, Ma ZY, Jia JZ . Isolation and Characterization of Mlo and NBS_LRR_like gene sequences in wheat. Acta Bot Sin, 2003,45(4):472-478. | [14] | Mizrachi I . GenBank: The Nucleotide Sequence Database. National Center for Biotechnology Information ( US), 2003. | [15] | Guo LB, Cheng SH, Qian Q . Highlights in sequencing and analysis of rice genome. Chin J Rice Sci, 2004,18(6):557-562. | [15] | 郭龙彪, 程式华, 钱前 . 水稻基因组测序和分析的研究进展. 中国水稻科学, 2004,18(6):557-562. | [16] | Xue Y, Li J, Xu Z . Recent highlights of the China rice functional genomics program. Trend Genet: TIG, 2003,19(7):390-394. | [17] | E ZG, Zhuang JY, Cao YS, Qian Q, Wang L. Information system of rice gene database based on INTERNET. Chin J Rice Sci, 2006,20(6):670-672. | [17] | 鄂志国, 庄杰云, 曹永生, 钱前, 王磊 . 基于INTERNET的水稻基因数据库信息系统. 中国水稻科学, 2006,20(6):670-672. | [18] | 黄东杰 . 玉米全基因组测序完成. 基因组学与应用生物学, 2009(6):1134. | [19] | Yu BL, Huang CF, Zhou WJ, Zhang WJ . Evolution study of wheat (Tritium aestivum L.) A, B and D genome based on DNA sequence similarity. Acta Genet Sin, 2001,28(7):635-639. | [19] | 余波澜, 黄朝峰, 周文娟, 张文俊 . 小麦A, B和D基因组同源DNA序列在进化过程中的演变研究. 遗传学报, 2001,28(7):635-639. | [20] | Jia JZ, Zhao SC, Kong XY, Li YR, Zhao GY, He WM, Appels RD, Pfeifer M, Tao YR, Zhang XY, Jing RL, Zhang C, Ma YZ, Gao LF, Gao C, Spannagl M, Mayer K, Li D, Pan SK, Zheng FY, Hu Q, Xia XC, Li JW, Liang QS, Chen J, Wicker T, Gou CY, Kuang HH, He GY, Luo YD, Keller B, Xia QJ, Lu P, Wang JY, Zou HF, Zhang RZ, Xu JY, Gao JL, Middleton C, Quan ZW, Liu GM, Wang J, International Wheat Genome Sequencing Consortium, Yang HM, Liu X, He ZH, Mao LF, Wang J. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 2013,496(7443):91-95. | [21] | Zhao GY, Zou C, Li K, Wang K, Li TB, Gao LF, Zhang XX, Wang HJ, Yang ZJ, Liu X, Jiang WK, Mao L, Kong XY, Jiao YN, Jia JZ . The Aegilops tauschii genome reveals multiple impacts of transposons. Nat Plants, 2017,3(12):946-955. | [22] | 田英芳, 张晓政, 周锦龙 . 转录组学研究进展及应用. 中学生物教学, 2013, ( 12):29-31. | [23] | Zhai R, Feng Y, Wang H, Zhan X, Shen X, Wu W, Zhang Y, Chen D, Dai G, Yang Z, Cao L, Cheng S . Transcriptome analysis of rice root heterosis by RNA-Seq. BMC Genom, 2013,14(1):1471-2164. | [24] | Zhai R, Feng Y, Zhan X, Shen X, Wu W, Yu P, Zhang Y, Chen D, Wang H, Lin Z, Cao L, Cheng S . Identification of transcriptome SNPs for assessing allele-specific gene expression in a super-hybrid rice Xieyou9308. PLoS One, 2013,8(4):e60668. | [25] | Trevisan S, Manoli A, Begheldo M, Nonis A, Enna M, Vaccaro S, Caporale G, Ruperti B, Quaggiotti S . Transcriptome analysis reveals coordinated spatiotemporal regulation of hemoglobin and nitrate reductase in response to nitrate in maize roots. New Phytol, 2011,192(2):338-352. | [26] | 傅艳萍, 王晓杰, 黄丽丽, 康振生 . 基于高通量测序的小麦转录组学研究. 见: 中国植物病理学会学术年会, 2011. | [27] | Ren Y . Upland cotton double recessive nuclear male sterile lines and proteome research department of fertile anther differences[Dissertation]. Nanjing Agricultural University, 2009. | [27] | 任燕 . 陆地棉双隐性核雄性不育系及可育系花药差异蛋白质组研究[学位论文]. 南京农业大学, 2009. | [28] | Uchiumi T, Shinkawa T, Isobe, Okamoto T . Identification of the major protein components o f rice egg cells. J Plant Res, 2007,120(4):575-579. | [29] | Shao CH, Wang P, Chen J, Li Y, Liu GR, Xie JS, Peng CR . Proteomics analysis of anti-senescence rice leaf under nutrient stress condition during late development stage. Acta Agric Boreali-Sin, 2015,30(4):51-58. | [29] | 邵彩虹, 王萍, 陈金, 李瑶, 刘光荣, 谢金水, 彭春瑞 . 养分胁迫对不易早衰类型水稻生育后期叶片影响的蛋白质组学分析. 华北农学报, 2015,30(4):51-58. | [30] | Wang XL, Dong PF, Wang Q, Li CH . Proteomic analysis of maize seedling leaves subjected to waterlogging stress. J Henan Agric Univ, 2015,49(5):608-615. | [30] | 王秀玲, 董朋飞, 王群, 李潮海 . 淹水胁迫条件下玉米苗期叶片蛋白质组学分析. 河南农业大学学报, 2015,49(5):608-615. | [31] | Yu T, Li G, Liu P, Dong ST, Zhang JW, Zhao B, Bai H . Proteomics analysis of grain position effects during early developmental stages of maize. Sci Agric Sin, 2016,49(1):54-68. | [31] | 于涛, 李耕, 刘鹏, 董树亭, 张吉旺, 赵斌, 柏晗 . 玉米早期发育阶段粒位效应的蛋白质组学分析. 中国农业科学, 2016,49(1):54-68. | [32] | Zhang DJ, Wang DD, Dong W, Ma JH, Yang SF, Zhang ZJ, Li CX . Transcriptomics and proteomics analysis in root of wheat under copper stress. J Henan Agric Sci, 2015,44(4):31-35. | [32] | 张黛静, 王多多, 董文, 马建辉, 杨淑芳, 张志娟, 李春喜 . 铜胁迫下小麦幼根转录组学及蛋白质组学研究. 河南农业科学, 2015,44(4):31-35. | [33] | Wang ZJ, Ma SC, Bi XJ, Shi XX, Li QF, Han F, Qi JJ, Wang SP, Zhang GS, Niu N . Differential proteomics on multi-ovary and mono-ovary trait of wheat. Acta Agron Sin, 2012,38(9):1716-1722. | [33] | 王志军, 马守才, 毕晓静, 史秀秀, 李清峰, 韩芳, 亓佳佳, 王书平, 张改生, 牛娜 . 小麦多子房和单子房性状的差异蛋白质组学研究. 作物学报, 2012,38(9):1716-1722. | [34] | Liu ZQ, Deng XJ, Xiao X, Zhang HQ . Research progress and predictionin rice proteomics. Seed, 2011,30(10):45-50. | [34] | 刘忠奇, 邓晓娟, 肖晓, 张海清 . 水稻蛋白质组学研究进展与展望. 种子, 2011,30(10):45-50. | [35] | Bian L . Metabonomics profile. Food drug A, 2005,7(4):73-74. | [35] | 边玲 . 代谢组学简介. 食品与药品A, 2005,7(4):73-74. | [36] | Shu XL, Frank T, Shu QY, Engel KH . Metabolite profiling of germinating rice of seeds. J Agric Food Chem, 2008,56(24):11612-11620. | [37] | Zhou YM, Guo XS, Huang X, Zhu SF . Metabolic fingerprint analysis of transgenic maize with phyA2 using gas chromatography-mass spectrometry. Lett Biotechnol, 2010,21(6):851-854, 860. | [37] | 周艳明, 郭欣硕, 黄新, 朱水芳 . 基于气相色谱-质谱联用技术的代谢组学方法在转植酸酶基因玉米代谢物指纹图谱分析中的应用. 生物技术通讯, 2010,21(6):851-854, 860. | [38] | Bao YZ, Yang N, Cang J, Feng MF, Lv Y, Peng K, Tian Y, Zhang D, Wang JH, Meng J . Metabolomic profiling of winter wheat Dongnongdongmai 1 grown at different temperatures. J Trit Crops, 2017,37(5):647-655. | [38] | 包雨卓, 杨宁, 苍晶, 冯明芳, 吕岩, 彭瞰看, 田宇, 张达, 王军虹, 孟婧 . 冬小麦东农冬麦1号在不同温度下的代谢组学差异分析. 麦类作物学报, 2017,37(5):647-655. | [39] | Yu GH, Fang XJ . Concept of phenomics and its development in plant science. Mol Plant Breed, 2009,7(4):639-645. | [39] | 玉光惠, 方宣钧 . 表型组学的概念及植物表型组学的发展. 分子植物育种, 2009,7(4):639-645. | [40] | Yang WN, Guo ZL, Huang CL, Duan LF, Chen GX, Jiang N, Fang W, Feng H, Xie WB, Lian XM, Wang GW, Luo QM, Zhang QF, Liu Q, Xiong LZ . Combining highthroughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice. Nat Comm, 2014,5:5087. | [41] | Duan LF, Huang CL, Chen GX, Xiong LZ, Liu Q, Yang WN . Determination of rice panicle numbers during heading by multi-angle imaging. Crop J, 2015,3(3):211-219. | [42] | 杨万能 . 水稻产量相关性状参数自动提取的数字化技术研究[学位论文]. 华中科技大学, 2011. | [43] | Zhang T . Functional genomics and comparative transcriptomics of rhizome and chilling tolerance in Oryza longistaminata[Dissertation]. Wuhan University, 2013. | [43] | 张婷 . 长雄野生稻地下茎及耐冷性状功能基因组学及比较转录组学分析[学位论文]. 武汉大学, 2013. | [44] | Zhang HL, Wang DW, Zhang ZB . Progress and prospects in the research on wheat drought response and resistance mechanisms using transcriptomic and proteomic approaches. J Trit Crops, 2016,36(7):878-887. | [44] | 张红亮, 王道文, 张正斌 . 利用转录组学和蛋白质组学技术揭示小麦抗旱分子机制的研究进展. 麦类作物学报, 2016,36(7):878-887. | [45] | 李明洲, 赵要风, 任军, 蒋思文, 李辉 . 组学时代农业动物遗传育种研究的机遇与挑战. 遗传, 2017,39(11):955-957. |
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