棉属四倍体AD1与二倍体A2、D5基因组的同源SSR分析

doi:10.16288/j.yczz.14-274

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HEREDITAS(Beijing) ›› 2015, Vol. 37 ›› Issue (2): 192-203.doi: 10.16288/j.yczz.14-274

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Homologous simple sequence repeats (SSRs) analysis in tetraploid (AD₁) and diploid (A₂, D₅) genomes of Gossypium

Gaofei Sun^1,2,Shoupu He¹,Zhaoe Pan,Xiongming Du¹

1. State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China;
2. School of Computer Science and Information Engineering, Anyang Institute of Technology, Anyang 455000, China

Received:2014-08-15 Online:2015-02-20 Published:2015-01-19

Abstract

Abstract: Simple sequence repeats (SSRs)are a class of repetitive DNA sequences, which are commonly used for genome analysis. Comparison of the homologous SSRs among different genomes is helpful to understand the evolutionary process in relative species. In this study, SSR scanning was performed to investigate their distribution and length variation among the genomes of G. raimondii (D₅), G. arboretum (A₂) and G. hirsutum (AD₁). The results demonstrated that the distribution of SSRs in A genome was very similar with that in D genome, while the length variation of homologous SSRs between A and AD genome was more conserved than that between D and AD genome. Compared with SSRs in AD genome, the number of SSRs with longer motif length in A genome was about five times of those with shorter motif length, while it was about three times in D genome. This implied that the length variation rates of homologous SSRs between diploid cotton and tetraploid cotton were different during the parallel evolution due to the subgenome fusion, and the motif length of most SSRs in tetraoploid genome tended to become shorter than homologous SSRs in diploid genome during the process of evolution. This study comprehensively compared the SSRs in three cotton genomes and revealed the significant difference among them, providing a foundation for further evolutionary study of Gossypium genome.

Key words: SSR, cotton genome, homologous SSR, evolution

Gaofei Sun,Shoupu He,Zhaoe Pan,Xiongming Du. Homologous simple sequence repeats (SSRs) analysis in tetraploid (AD₁) and diploid (A₂, D₅) genomes of Gossypium[J]. HEREDITAS(Beijing), 2015, 37(2): 192-203.

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Homologous simple sequence repeats (SSRs) analysis in tetraploid (AD₁) and diploid (A₂, D₅) genomes of Gossypium

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Homologous simple sequence repeats (SSRs) analysis in tetraploid (AD1) and diploid (A2, D5) genomes of Gossypium

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Homologous simple sequence repeats (SSRs) analysis in tetraploid (AD₁) and diploid (A₂, D₅) genomes of Gossypium