Hereditas(Beijing) ›› 2022, Vol. 44 ›› Issue (9): 772-782.doi: 10.16288/j.yczz.22-116
• Review • Previous Articles Next Articles
Dandan Wu1,2(), Mingkun Zhu1, Zhongyan Fang1, Wei Ma3(
)
Received:
2022-04-18
Revised:
2022-07-29
Online:
2022-09-20
Published:
2022-08-17
Contact:
Ma Wei
E-mail:14646@sicau.edu.cn;weima03@jiangnan.edu.cn
Supported by:
Dandan Wu, Mingkun Zhu, Zhongyan Fang, Wei Ma. Progress on molecular composition and genetic mechanism of plant B chromosomes[J]. Hereditas(Beijing), 2022, 44(9): 772-782.
Add to citation manager EndNote|Reference Manager|ProCite|BibTeX|RefWorks
[1] | Jones RN . New species with B chromosomes discovered since 1980. Nucleus, 2017,60(3):263-281. |
[2] | Shu FJ, Zhang XR, Cao XR, Li CJ . Studies of the polymorphism of Elaphodus cephalophus B chromosomes and its transmit mechanism. Hereditas (Beijing), 1999,21(6):23-27. |
束峰珏, 张锡然, 曹祥荣, 李朝军 . 毛冠鹿B染色体多态及遗传机制探讨. 遗传, 1999,21(6):23-27. | |
[3] | Houben A . B chromosomes--a matter of chromosome drive. Front Plant Sci, 2017,8:210. |
[4] | Jones RN, Houben A . B chromosomes in plants: escapees from the A chromosome genome? Trends Plant Sci, 2003,8(9):417-423. |
[5] | Camacho JP, Sharbel TF, Beukeboom LW . B-chromosome evolution. Philos Trans R Soc Lond B Biol Sci, 2000,355(1394):163-178. |
[6] | Valente GT, Conte MA, Fantinatti BE Cabral-de-Mello DC, Carvalho RF, Vicari MR, Kocher TD, Martins C. Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses. Mol Biol Evol, 2014,31(8):2061-2072. |
[7] | Martis MM, Klemme S, Banaei-Moghaddam AM, Blattner FR, Macas J, Schmutzer T, Scholz U, Gundlach H, Wicker T, Šimková H, Novák P, Neumann P, Kubaláková M, Bauer E, Haseneyer G, Fuchs J, Doležel J, Stein N, Mayer KFX, Houben A . Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc Natl Acad Sci USA, 2012,109(33):13343-13346. |
[8] | Ruban A, Fuchs J, Marques A, Schubert V, Soloviev A, Raskina O, Badaeva E, Houben A . B chromosomes of Aegilops speltoides are enriched in organelle genome- derived sequences. PLoS One, 2014,9(2):e90214. |
[9] | Ruban A, Schmutz T, Wu DD, Fuchs J, Boudichevskaia A, Rubtsova M, Pistrick K, Melzer M, Himmelbach A, Schubert V, Scholz U, Houben A . Supernumerary B chromosomes of Aegilops speltoides undergo precise elimination in roots early in embryo development. Nat Commun, 2020,11(1):2764. |
[10] | Dhar MK, Kour J, Kaul S . Origin, behaviour, and transmission of B chromosome with special reference to Plantago lagopus. Genes (Basel), 2019,10(2):152. |
[11] | Hauber DP . Supernumerary chromosomes in Tradescantia I. meiotic behavior of three homologous isochromosomes. Genetics, 1987,75:117-121. |
[12] | Nakao M . Cytological studies on the nuclear division of the pollen mother cells of some cereals and their hybrids. The Journal of the College of Agriculture, Tohoku Imperial University, 1911,4(3):173-190. |
[13] | D'Ambrosio U, Alonso-Lifante MP, Barros K, Kovařík A, Mas de Xaxars G, Garcia S. B-chrom: a database on B-chromosomes of plants, animals and fungi. New Phytol, 2017,216(3):635-642. |
[14] | Levin DA, Palestis BG, Jones RN, Trivers R . Phyletic hot spots for B chromosomes in angiosperms. Evolution, 2005,59(5):962-969. |
[15] | Houben A, Kumke K, Nagaki K, Hause G . CENH3 distribution and differential chromatin modifications during pollen development in rye (Secale cereale L.). Chromosome Res, 2011,19(4):471-480. |
[16] | Jones RN . B chromosomes in plants. New Phytol, 1995,131(4):411-434. |
[17] | Zečević LJ, Paunović D . The effect of B-chromosomes on chiasma frequency in wild populations of rye. Chromosoma, 1969,27:198-200. |
[18] | Jones RN, Rees H. B chromosomes, 1st edn. London, UK, New York, NY, USA: Academic Press, 1982. |
[19] | Bougourd SM, Jones RN . B chromosomes: a physiological enigma. New Phytol, 1997,137(1):43-54. |
[20] | Randolph LF . Genetic characteristics of the B chromosomes in maize. Genetics, 1941,26(6):608-631. |
[21] | Dherawattana A, Sadanaga K . Cytogenetics of a crown rust-resistant hexaploid oat with 42+2 fragment chromosomes. Crop Sci, 1973,13(6):591-594. |
[22] | Zarchi Y, Hillel J, Simchen G . Supernumerary chromosomes and chiasma distribution in Triticum speltoides. Heredity, 1974,33:173-180. |
[23] | Belyayev A, Kalendar R, Brodsky L, Nevo E, Schulman AH, Raskina O . Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mob DNA, 2011,1(1):6. |
[24] | Mendelson D, Zohary D . Behaviour and transmission of supernumerary chromosomes in Aegilops speltoides. Heredity, 1972,29:329-346. |
[25] | Belyayev A, Raskina O . Chromosome evolution in marginal populations of Aegilops speltoides: causes and consequences. Ann Bot, 2013,111(4):531-538. |
[26] | Cebria A, Navarro ML, Puertas MJ . Genetic control of B chromosome transmission in Aegilops speltoides(Poaceae). Am J Bot, 1994,81(11):1502-1507. |
[27] | Hasegawa N . A cytological study on 8-chromosome rye. Cytologia, 1934,6(1):68-77. |
[28] | Langdon T, Seago C, Jones RN, Ougham H, Thomas H, Forster JW, Jenkins G . De novo evolution of satellite DNA on the rye B chromosome. Genetics, 2000,154(2):869-884. |
[29] | Müntzing A . Cytological studies of extra fragment chromosomes in rye II. transmission and multiplication of standard fragments and iso-fragments. Hereditas, 1945,31(3-4):457-477. |
[30] | Håkansson A . Behaviour of accessory rye chromosomes in the embryo-sac. Hereditas, 1948,34(1-2):35-59. |
[31] | Puertas MJ, González-Sánchez M, Manzanero S, Romera F, Jiménez MM . Genetic control of the rate of transmission of rye B chromosomes. IV. Localization of the genes controlling B transmission rate. Heredity, 1998,80(2):209-213. |
[32] | Niwa K, Sakamoto S . Origin of B chromosomes in cultivated rye. Genome, 1995,38(2):307-312. |
[33] | Endo TR, Nasuda S, Jones RN, Dou QW, Akahori A, Wakimoto M, Tanaka H, Niwa K, Tsujimoto H . Dissection of rye B chromosomes, and nondisjunction properties of the dissected segments in a common wheat background. Genes Genet Syst, 2008,83(1):23-30. |
[34] | Kishikawa H, Suzuki A . Cytological study on hypo- pentaploid Triticale with four B chromosomes of rye. The Japanese Journal of Genetics, 1982,57(1):17-24. |
[35] | Wu DD, Ruban A, Fuchs J, Macas J, Novák P, Vaio M, Zhou YH, Houben A . Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes. New Phytol, 2019,223(3):1340-1352. |
[36] | Yu WC, Lamb JC, Han FP, Birchler JA . Telomere- mediated chromosomal truncation in maize. Proc Natl Acad Sci USA, 2006,103(46):17331-17336. |
[37] | Rosato M, Chiavarino AM, Naranjo CA, Puertas MJ, Poggio L . Genetic control of B chromosome transmission rate in Zea mays ssp. mays(Poaceae). Am J Bot, 1996,83(9):1107-1112. |
[38] | González-Sánchez M, González-González E, Molina F, Chiavarino AM, Rosato M, Puertas MJ . One gene determines maize B chromosome accumulation by preferential fertilisation; another gene(s) determines their meiotic loss. Heredity (Edinb), 2003,90(2):122-129. |
[39] | Carlson WR . Locating a site on the maize B chromosome that controls preferential fertilization. Genome, 2007,50(6):578-587. |
[40] | Masonbrink RE, Birchler JA . Sporophytic nondisjunction of the maize B chromosome at high copy numbers. J Genet Genomics, 2010,37(1):79-84. |
[41] | Jones RN . B-chromosome systems in flowering plants and animal species. Int Rev Cytol, 1975,40:1-100. |
[42] | Donald TM, Houben A, Leach CR, Timmis JN . Ribosomal RNA genes specific to the B chromosomes in Brachycome dichromosomatica are not transcribed in leaf tissue. Genome, 1997,40(5):674-681 |
[43] | Szczerbal I, Switonski M . B chromosomes of the Chinese raccoon dog (Nyctereutes procyonoides procyonoides Gray) contain inactive NOR-like sequences. Caryologia, 2003,56(2):213-216. |
[44] | Leach CR, Houben A, Field B, Pistrick K, Demidov D, Timmis JN . Molecular evidence for transcription of genes on a B chromosome in Crepis capillaris. Genetics, 2005,171(1):269-278. |
[45] | Huang W, Du Y, Zhao X, Jin WW . B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.). BMC Plant Biol, 2016,16:88. |
[46] | Ruban A, Schmutzer T, Scholz U, Houben A . How next-generation sequencing has aided our understanding of the sequence composition and origin of B chromosomes. Genes (Basel), 2017,8(11):294. |
[47] | Fuchs J, Demidov D, Houben A, Schubert I . Chromosomal histone modification patterns--from conservation to diversity. Trends Plant Sci, 2006,11(4):199-208. |
[48] | Marschner S, Kumke K, Houben A . B chromosomes of B. dichromosomatica show a reduced level of euchromatic histone H3 methylation marks. Chromosome Res, 2007,15(2):215-222. |
[49] | Carchilan M, Delgado M, Ribeiro T, Costa-Nunes P, Caperta A, Morais-Cecílio L, Jones RN, Viegas W, Houben A . Transcriptionally active heterochromatin in rye B chromosomes. Plant Cell, 2007,19(6):1738-1749. |
[50] | Jin WW, Lamb JC, Zhang WL, Kolano B, Birchler JA, Jiang JM . Histone modifications associated with both A and B chromosomes of maize. Chromosome Res, 2008,16(8):1203-1214. |
[51] | Klemme S, Banaei-Moghaddam AM, Macas J, Wicker T, Novák P, Houben A . High-copy sequences reveal distinct evolution of the rye B chromosome. New Phytol, 2013,199(2):550-558. |
[52] | Marques A, Banaei-Moghaddam AM, Klemme S, Blattner FR, Niwa K, Guerra M, Houben A . B chromosomes of rye are highly conserved and accompanied the development of early agriculture. Ann Bot, 2013,112(3):527-534. |
[53] | Marques A, Klemme S, Houben A . Evolution of plant B chromosome enriched sequences. Genes (Basel), 2018,9(10):515. |
[54] | Blavet N, Yang H, Su HD, Solanský P, Douglas RN, Karafiátová M, Šimková L, Zhang J, Liu YL, Hou J, Shi XW, Chen C, El-Walid M, McCaw ME, Albert PS, Gao Z, Zhao CZ, Ben-Zvi G, Glick L, Kol G, Shi JH, Vrána J, Šimková H, Lamb JC, Newton K, Dawe RK, Doležel J, Ji TM, Baruch K, Cheng JL, Han FP, Birchler JA, Bartoš J. Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution. Proc Natl Acad Sci USA, 2021,118(23):e2104254118. |
[55] | Alfenito MR, Birchler JA . Molecular characterization of a maize B chromosome centric sequence. Genetics, 1993,135(2):589-597. |
[56] | Cheng YM, Lin BY . Cloning and characterization of maize B chromosome sequences derived from microdissection. Genetics, 2003,164(1):299-310. |
[57] | Cheng YM, Lin BY . Molecular organization of large fragments in the maize B chromosome: indication of a novel repeat. Genetics, 2004,166(4):1947-1961. |
[58] | Jin WW, Lamb JC, Vega JM, Dawe RK, Birchler JA, Jiang JM . Molecular and functional dissection of the maize B chromosome centromere. Plant Cell, 2005,17(5):1412-1423. |
[59] | Lamb JC, Kato A, Birchler JA . Sequences associated with A chromosome centromeres are present throughout the maize B chromosome. Chromosoma, 2005,113(7):337-349. |
[60] | Lamb JC, Riddle NC, Cheng YM, Theuri J, Birchler JA . Localization and transcription of a retrotransposon- derived element on the maize B chromosome. Chromosome Res, 2007,15(5):383-398. |
[61] | Stark EA, Connerton I, Bennett ST, Barnes SR, Parker JS, Forster JW . Molecular analysis of the structure of the maize B-chromosome. Chromosome Res, 1996,4(1):15-23. |
[62] | Ziegler CG, Lamatsch DK, Steinlein C, Engel W, Schartl M, Schmid M . The giant B chromosome of the cyprinid fish Alburnus alburnus harbours a retrotransposon-derived repetitive DNA sequence. Chromosome Res, 2003,11(1):23-35. |
[63] | Coan RLB, Martins C . Landscape of transposable elements focusing on the B chromosome of the cichlid fish Astatotilapia latifasciata. Genes (Basel), 2018,9(6):269. |
[64] | Biémont C, Vieira C . Genetics: junk DNA as an evolutionary force. Nature, 2006,443(7111):521-524. |
[65] | Timmis JN, Ayliffe MA, Huang CY, Martin W . Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet, 2004,5(2):123-135. |
[66] | Lloyd AH, Timmis JN . The origin and characterization of new nuclear genes originating from a cytoplasmic organellar genome. Mol Biol Evol, 2011,28(7):2019-2028. |
[67] | Banaei-Moghaddam AM, Meier K, Karimi-Ashtiyani R, Houben A . Formation and expression of pseudogenes on the B chromosome of rye. Plant Cell, 2013,25(7):2536-2544. |
[68] | Ma W, Gabriel TS, Martis MM, Gursinsky T, Schubert V, Vrána J, Doležel J, Grundlach H, Altschmied L, Scholz U, Himmelbach A, Behrens SE, Banaei-Moghaddam AM, Houben A . Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog. New Phytol, 2017,213(2):916-928. |
[69] | Boudichevskaia A, Ruban A, Thiel J, Fiebig A, Houben A . Tissue-specific transcriptome analysis reveals candidate transcripts associated with the process of programmed B chromosome elimination in Aegilops speltoides. Int J Mol Sci, 2020,21(20):7596. |
[70] | Huang YH, Peng SF, Lin YP, Cheng YM . The maize B chromosome is capable of expressing microRNAs and altering the expression of microRNAs derived from A chromosomes. Chromosome Res, 2020,28(2):129-138. |
[71] | Shi XW, Yang H, Chen C, Hou J, Ji TM, Cheng JL, Birchler JA . Effect of aneuploidy of a non-essential chromosome on gene expression in maize. Plant J, 2022,110(1):193-211. |
[72] | Ma W, Liu ZJ, Beier S, Houben A, Carpentier S . Identification of rye B chromosome-associated peptides by mass spectrometry. New Phytol, 2021,230(6):2179-2185. |
[73] | Bernardino ACS, Cabral-de-Mello DC, Machado CB, Palacios-Gimenez OM, Santos N, Loreto V. B chromosome variants of the grasshopper Xyleus discoideus angulatus are potentially derived from pericentromeric DNA. Cytogenet Genome Res, 2017,152(4):213-221. |
[74] | Ramos É, Cardoso AL, Brown J, Marques DF, Fantinatti BEA, Cabral-de-Mello DC, Oliveira RA, O'Neill RJ, Martins C. The repetitive DNA element BncDNA, enriched in the B chromosome of the cichlid fish Astatotilapia latifasciata, transcribes a potentially noncoding RNA. Chromosoma, 2017,126(2):313-323. |
[75] | Habig M, Kema GHJ, Stukenbrock EH . Meiotic drive of female-inherited supernumerary chromosomes in a pathogenic fungus. Elife, 2018,7:e40251. |
[76] | Hanlon SL, Miller DE, Eche S, Hawley RS . Origin, composition, and structure of the supernumerary B chromosome of Drosophila melanogaster. Genetics, 2018,210(4):1197-1212. |
[77] | Nicholson J . Imbalance is not an impediment: understanding the natural imbalances of sex and B-chromosomes in species by understanding cancer karyotypes. The Winnower, 2015,2:e143284-47033. |
[78] | Ghiurcuta CG, Moret BM . Evaluating synteny for improved comparative studies. Bioinformatics, 2014,30(12):i9-18. |
[79] | Yu WC, Han FP, Gao Z, Vega JM, Birchler JA . Construction and behavior of engineered minichromosomes in maize. Proc Natl Acad Sci USA, 2007,104(21):8924-8929. |
[80] | Wang K, Wu YF, Zhang WL, Dawe RK, Jiang JM . Maize centromeres expand and adopt a uniform size in the genetic background of oat. Genome Res, 2014,24(1):107-116. |
[81] | Tseng SH, Peng SF, Cheng YM . Analysis of B chromosome nondisjunction induced by the r-X1 deficiency in maize. Chromosome Res, 2017,26(3):153-162. |
[82] | Fu SL, Gao Z, Birchler J, Han FP . Dicentric chromosome formation and epigenetics of centromere formation in plants. J Genet Genomics, 2012,39(3):125-130. |
[83] | Burrack LS, Hutton FH, Matter KJ, Clancey SA, Liachko I, Plemmons AE, Saha A, Power EA, Turman B, Thevandavakkam MA, Ay F, Dunham MJ, Berman J . Neocentromeres provide chromosome segregation accuracy and centromere clustering to multiple loci along a Candida albicans chromosome. PLoS Genet, 2016,12(9):e1006317. |
[84] | Schneider KL, Xie ZD, Wolfgruber TK, Presting GG . Inbreeding drives maize centromere evolution. Proc Natl Acad Sci USA, 2016,113(8):e987-996. |
[1] | Yuan Zhang, Yuting Zhao, Lenan Zhuang, Jin He. Transcriptional regulation of transcriptional Mediator complexes in cardiovascular development and disease [J]. Hereditas(Beijing), 2022, 44(5): 383-397. |
[2] | Guofang Liu, Peidong Ren, Wenxin Ye, Guangtao Lu. Analysis of transcriptional regulators HpaR1 and Clp regulating the expression of glycoside hydrolase-encoding gene in the Xanthomonas campestris pv. campestris [J]. Hereditas(Beijing), 2021, 43(9): 910-920. |
[3] | Tianyi Wang, Yingxiang Wang, Chenjiang You. Structural and functional characteristics of plant PHD domain-containing proteins [J]. Hereditas(Beijing), 2021, 43(4): 323-339. |
[4] | Yuanyuan Hao, Xiangqian Zhao, Fudeng Huang, Chunshou Li. The role of PPR proteins in posttranscriptional regulation of organelle components in plants [J]. Hereditas(Beijing), 2021, 43(11): 1050-1065. |
[5] | Xiaofen Qiu, Dong’e Tang, Haiyan Yu, Qiuyan Liao, Zhiyang Hu, Jun Zhou, Xin Zhao, Huiyan He, Zhuojian Liang, Chengming Xu, Ming Yang, Yong Dai. Analysis of transcription factors in accessible open chromatin in the 18-trisomy syndrome based on single cell ATAC sequencing technique [J]. Hereditas(Beijing), 2021, 43(1): 74-83. |
[6] | Xiaomeng Gao, Zhihua Zhang. Three-dimensional structure and function of chromatin regulated by “liquid-liquid phase separation” of biological macromolecules. [J]. Hereditas(Beijing), 2020, 42(1): 45-56. |
[7] | Yu Zhang, Yuda Fang. Progresses on the structure and function of cohesin [J]. Hereditas(Beijing), 2020, 42(1): 57-72. |
[8] | Xiaofei Zheng,Haiyan Huang,Qiang Wu. Chromatin architectural protein CTCF regulates gene expression of the UGT1 cluster [J]. Hereditas(Beijing), 2019, 41(6): 509-523. |
[9] | Chunyou Ning,Mengnan He,Qianzi Tang,Qing Zhu,Mingzhou Li,Diyan Li. Advances in mammalian three-dimensional genome by using Hi-C technology approach [J]. Hereditas(Beijing), 2019, 41(3): 215-233. |
[10] | Lili Liu, Aiwei Guo, Peifu Wu, Fenfen Chen, Yajin Yang, Qin Zhang. Regulation of VPS28 gene knockdown on the milk fat synthesis in Chinese Holstein dairy [J]. Hereditas(Beijing), 2018, 40(12): 1092-1100. |
[11] | Min Cheng, Wenjian Zhang, Tianyu Xing, Xiaohong Yan, Yumao Li, Hui Li, Ning Wang. Functional analysis of the upstream regulatory region of chicken miR-17-92 cluster [J]. Hereditas(Beijing), 2016, 38(8): 724-735. |
[12] | Feng Yang, Fan Yi, Huiqing Cao, Zicai Liang, Quan Du. The emerging landscape of long non-coding RNAs [J]. HEREDITAS(Beijing), 2014, 36(5): 456-468. |
[13] | Deling Lin, Ying Luo, Yi Song. The post-transcriptional regulation of the DNA damage response [J]. HEREDITAS, 2014, 36(4): 309-318. |
[14] | Nan Ding, Hongzhu Qu, Xiangdong Fang. The ENCODE project and functional genomics studies [J]. HEREDITAS, 2014, 36(3): 237-247. |
[15] | ZHANG Jun-Fang ZHU Hua-Bin ZHANG Liu-Guang HAO Hai-Sheng ZHAO Xue-Ming QIN Tong LU Yong-Qiang WANG Dong. Advance on research of gene expression during spermiogenesis at transcription level [J]. HEREDITAS, 2013, 35(5): 587-594. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||
www.chinagene.cn
备案号:京ICP备09063187号