CRISPR/Cas9系统在林木基因编辑中的应用
收稿日期: 2020-04-04
修回日期: 2020-05-25
网络出版日期: 2020-06-15
基金资助
青年人才托举工程编号(YESS20160121);江苏省高校“青蓝工程”优秀青年骨干教师项目和江苏省优势学科项目资助
Application of CRISPR/Cas9 mediated gene editing in trees
Received date: 2020-04-04
Revised date: 2020-05-25
Online published: 2020-06-15
Supported by
Supported by the Youth Elite Science Sponsorship Program by CAST No(YESS20160121);the Qing Lan Talent Support Program at Jiangsu Province, and the Priority Academic Program Development Program of Jiangsu Province
CRISPR/Cas9系统可以对目标基因进行精确定点编辑,是目前公认的最有发展潜力的基因编辑技术,并已在主要粮食及经济作物的精准育种方面发挥了重要作用。CRISPR/Cas9系统的出现也为林木基础研究和分子育种带来了新的途径。近年来CRISPR/Cas9系统在林木遗传研究中的应用越来越广泛,不仅实现了抗旱、抗病等林木新品种的培育,而且在调控木质素合成和缩短林木育种周期等方面也展现了巨大潜力。本文详细梳理了CRISPR/Cas9系统在林木基因功能验证及遗传改良中的研究进展,并对未来需要完善的相关问题和发展趋势进行了展望,以期为林木功能基因组研究和林木基因工程育种提供有益参考。
勘误:CRISPR/Cas9系统在林木基因编辑中的应用
关键词: CRISPR/Cas9; 基因编辑; 林木; 基因功能; 遗传改良
陈赢男, 陆静 . CRISPR/Cas9系统在林木基因编辑中的应用[J]. 遗传, 2020 , 42(7) : 657 -668 . DOI: 10.16288/j.yczz.20-092
The CRISPR/Cas9 system, which can induce precise modifications at a target gene, has been recognized as the most promising gene editing technology, and has played an important role in precision crop breeding. It also provides a new strategy for fundamental researches and molecular breeding of forest trees. Recently, CRISPR/Cas9-mediated gene editing has been applied more extensively in tree genetic studies. It has not only succeeded in developing new drought- resistance or disease-resistant cultivars, but also shows a great potential in regulating lignin biosynthesis and shortening the breeding cycle of forest trees. In this review, we summarize the application and advance of CRISPR/Cas9 in gene function identification and genetic improvement of forest plants. We also discuss the related problems and future perspectives. This review aims to provide a useful reference for tree functional genomics and genetic engineering breeding.
Key words: CRISPR/Cas9; gene editing; trees; gene function; genetic improvement
| [1] | Li JF, Norville JE, Aach J, McCormack M,Zhang DD,Bush J,Church GM,Sheen J. Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotechnol, 2013,31(8):688-691. |
| [2] | Shan SC, Soltis PS, Soltis DE, Yang B . Considerations in adapting CRISPR/Cas9 in nongenetic model plant systems. Appl Plant Sci, 2020,8(1):e11314. |
| [3] | Wang YP, Cheng X, Gao CX, Qiu JL . Wheat resistant to powdery mildew was developed by genome editing. Hereditas (Beijing), 2014,36(8):848. |
| [3] | 王延鹏, 程曦, 高彩霞, 邱金龙 . 利用基因组编辑技术创制抗白粉病小麦. 遗传, 2014,36(8):848. |
| [4] | Zhang DW, Zhang CF, Dong F, Huang YL, Zhang Y, Zhou H . Application of CRISPR/Cas9 system in breeding of new antiviral plant germplasm. Hereditas(Beijing), 2016,38(9):811-820. |
| [4] | 张道微, 张超凡, 董芳, 黄艳岚, 张亚, 周虹 . CRISPR/ Cas9系统在培育抗病毒植物新种质中的应用. 遗传, 2016,38(9):811-820. |
| [5] | Chen KL, Wang YP, Zhang R, Zhang HW, Gao CX . CRISPR/Cas genome editing and precision plant breeding in agriculture. Annu Rev Plant Biol, 2019,70:667-697. |
| [6] | Fan D, Liu TT, Li CF, Jiao B, Li S, Hou YS, Luo KM . Efficient CRISPR/Cas9-mediated targeted mutagenesis in Populus in the first generation. Sci Rep, 2015,5:12217. |
| [7] | Zhou XH, Jacobs TB, Xue LJ, Harding SA, Tsai CJ . Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennial Populus reveals 4‐coumarate: CoA ligase specificity and redundancy. New Phytol, 2015,208(2):298-301. |
| [8] | Elorriaga E, Klocko AL, Ma C, Strauss SH . Variation in mutation spectra among CRISPR/Cas9 mutagenized poplars. Front Plant Sci, 2018,9:594. |
| [9] | Bruegmann T, Deecke K, Fladung M . Evaluating the efficiency of gRNAs in CRISPR/Cas9 mediated genome editing in poplars. Int J Mol Sci, 2019,20(15):3623. |
| [10] | Ma JC, Wan DS, Duan BB, Bai XT, Bai QX, Chen NN, Ma T . Genome sequence and genetic transformation of a widely distributed and cultivated poplar. Plant Biotechnol J, 2019,17(2):451-460. |
| [11] | Muhr M, Paulat M, Awwanah M, Brinkk?tter M, Teichmann T . CRISPR/Cas9-mediated knockout of Populus BRANCHED1 and BRANCHED2 orthologs reveals a major function in bud outgrowth control. Tree Physiol, 2018,38(10):1588-1597. |
| [12] | Takata N, Awano T, Nakata MT, Sano Y, Sakamoto S, Mitsuda N, Taniguchi T . Populus NST/SND orthologs are key regulators of secondary cell wall formation in wood fibers, phloem fibers and xylem ray parenchyma cells. Tree Physiol, 2019,39(4):514-525. |
| [13] | Fan CF, Yu H, Qin SF, Li YL, Alam A, Xu CZ, Fan D, Zhang QW, Wang YT, Zhu WB, Peng LC, Luo KM . Brassinosteroid overproduction improves lignocellulose quantity and quality to maximize bioethanol yield under green-like biomass process in transgenic poplar. Biotechnol Biofuels, 2020,13(1):9. |
| [14] | Wang LJ, Ran LY, Hou YS, Tian QY, Li CF, Liu R, Fan D, Luo KM . The transcription factor MYB115 contributes to the regulation of proanthocyanidin biosynthesis and enhances fungal resistance in poplar. New Phytol, 2017,215(1):351-367. |
| [15] | Yang L, Zhao X, Ran LY, Li CF, Fan D, Luo KM . PtoMYB156 is involved in negative regulation of phenylpropanoid metabolism and secondary cell wall biosynthesis during wood formation in poplar. Sci Rep, 2017,7(1):41209. |
| [16] | Xu CZ, Fu XK, Liu R, Guo L, Ran LY, Li CF, Tian QY, Jiao B, Wang BJ, Luo KM . PtoMYB170 positively regulates lignin deposition during wood formation in poplar and confers drought tolerance in transgenic Arabidopsis. Tree Physiol, 2017,37(12):1713-1726. |
| [17] | Wan SZ, Li CF, Ma XD, Luo KM . PtrMYB57 contributes to the negative regulation of anthocyanin and proanthocyanidin biosynthesis in poplar. Plant Cell Rep, 2017,36(8):1263-1276. |
| [18] | Fan D, Wang XQ, Tang XF, Ye X, Ren S, Wang DH, Luo KM . Histone H3K9 demethylase JMJ25 epigenetically modulates anthocyanin biosynthesis in poplar. Plant J, 2018,96(6):1121-1136. |
| [19] | Jiao B, Zhao X, Lu WX, Guo L, Luo KM . The R2R3 MYB transcription factor MYB189 negatively regulates secondary cell wall biosynthesis in Populus. Tree Physiol, 2019,39(7):1187-1200. |
| [20] | Shen Y, Li YL, Xu D, Yang C, Li CF, Luo KM . Molecular cloning and characterization of a brassinosteriod biosynthesis-related gene PtoDWF4 from Populus tomentosa. Tree Physiol, 2018,38(9):1424-1436. |
| [21] | An Y, Zhou YY, Han X, Shen C, Wang S, Liu C, Yin WL, Xia XL . The GATA transcription factor GNC plays an important role in photosynthesis and growth in poplar. J Exp Bot, 2020,71(6):1969-1984. |
| [22] | Ramos-Sánchez JM, Triozzi PM, Alique D, Geng F, Gao MJ, Jaeger KE, Wigge PA, Allona I, Perales M,. LHY2 integrates night-length information to determine timing of poplar photoperiodic growth. Curr Biol, 2019, 29(14): 2402-2406.e4. |
| [23] | Maurya JP, Singh RK, Miskolczi PC, Prasad AN, Jonsson K, Wu F, Bhalerao RP. Branching regulator BRC1 mediates photoperiodic control of seasonal growth in hybrid aspen. Curr Biol, 2020, 30(1): 122-126. e2. |
| [24] | Li S, Lin YJ, Wang PY, Zhang BF, Li M, Chen S, Shi R, Tunlaya-Anukit S, Liu XY, Wang ZF, Dai XF, Yu J, Zhou CG, Liu BG, Wang JP, Chiang VL, Li W . The AREB1 transcription factor influences histone acetylation to regulate drought responses and tolerance in Populus trichocarpa. Plant Cell, 2019,31(3):663-686. |
| [25] | Zhou YY, Zhang Y, Wang XW, Han X, An Y, Lin SW, Shen C, Wen JL, Liu C, Yin WL, Xia XL . The root‐specific NF‐Y family transcription factor, PdNF‐YB21, positively regulates root growth and drought resistance by ABA‐ mediated IAA transport in Populus. New Phytol, 2020, doi: 10.1111/nph.16524. |
| [26] | Jiang YZ, Guo L, Ma XD, Zhao X, Jiao B, Li CF, Luo KM . The WRKY transcription factors PtrWRKY18 and PtrWRKY35 promote Melampsora resistance in Populus. Tree Physiol, 2017,37(5):665-675. |
| [27] | Fellenberg C, Corea O, Yan LH, Archinuk F, Piirtola EM, Gordon H, Reichelt M, Brandt W, Wulff J, Ehlting J, Peter Constabel C . Discovery of salicyl benzoate UDP‐ glycosyltransferase, a central enzyme in poplar salicinoid phenolic glycoside biosynthesis. Plant J, 2020,102(1):99-115. |
| [28] | Johnson RA, Gurevich V, Filler S, Samach A, Levy AA . Comparative assessments of CRISPR-Cas nucleases’ cleavage efficiency in planta. Plant Mol Biol, 2015,87(1-2):143-156. |
| [29] | Zhou JH, Li DD, Wang GM, Wang FX, Kunjal M, Joldersma D, Liu ZC . Application and future perspective of CRISPR/Cas9 genome editing in fruit crops. J Integr Plant Biol, 2020,62(3):269-286. |
| [30] | Jia HG, Wang N . Targeted genome editing of sweet orange using Cas9/sgRNA. PLoS One, 2014,9(4):e93806. |
| [31] | Peng AH, Chen SC, Lei TG, Xu LZ, He YR, Wu L, Yao LX, Zou XP . Engineering canker‐resistant plants through CRISPR/Cas9‐targeted editing of the susceptibility gene CsLOB1 promoter in citrus. Plant Biotechnol J, 2017,15(12):1509-1519. |
| [32] | Zhang F, LeBlanc C,Irish VF,Jacob Y. Rapid and efficient CRISPR/Cas9 gene editing in Citrus using the YAO promoter. Plant Cell Rep, 2017,36(12):1883-1887. |
| [33] | Jia HG, Orbovic V, Jones JB, Wang N . Modification of the PthA4 effector binding elements in Type I CsLOB1 promoter using Cas9/sg RNA to produce transgenic Duncan grapefruit alleviating XccΔpthA4: dCs LOB 1.3 infection. Plant Biotechnol J, 2016,14(5):1291-1301. |
| [34] | Jia HG, Zhang YZ, Orbovi? V, Xu J, White FF, Jones JB, Wang N . Genome editing of the disease susceptibility gene CsLOB1 in citrus confers resistance to citrus canker. Plant Biotechnol J, 2017,15(7):817-823. |
| [35] | Jia HG, Xu J, Orbovi? V, Zhang YZ, Wang N . Editing citrus genome via SaCas9/sgRNA system. Front Plant Sci, 2017,8:2135. |
| [36] | Jia HG, Orbovi? V, Wang N . CRISPR‐LbCas12a‐mediated modification of citrus. Plant Biotechnol J, 2019,17(10):1928-1937. |
| [37] | Liu GY, Li GS, Zhang YL, Chen LT . Current advances on CRISPR/Cas genome editing technologies in plants. J South Chin Agric Univ, 2019,40(5):38-49. |
| [37] | 刘耀光, 李构思, 张雅玲, 陈乐天 . CRISPR/Cas植物基因组编辑技术研究进展. 华南农业大学学报, 2019,40(5):38-49. |
| [38] | Wang ZP, Wang SB, Li DW, Zhang Q, Li L, Zhong CH, Liu YF, Huang HW . Optimized paired‐sgRNA/Cas9 cloning and expression cassette triggers high‐efficiency multiplex genome editing in kiwifruit. Plant Biotechnol J, 2018,16(8):1424-1433. |
| [39] | Xie KB, Minkenberg B, Yang YN . Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc Natl Acad Sci USA, 2015,112(11):3570-3575. |
| [40] | Varkonyi‐Gasic E, Wang TC, Voogd C, Jeon S, Drummond RSM, Gleave AP, Allan AC . Mutagenesis of kiwifruit CENTRORADIALIS‐like genes transforms a climbing woody perennial with long juvenility and axillary flowering into a compact plant with rapid terminal flowering. Plant Biotechnol J, 2019,17(5):869-880. |
| [41] | Wang Y, Liu XJ, Ren C, Zhong GY, Yang L, Li SH, Liang ZC . Identification of genomic sites for CRISPR/Cas9- based genome editing in the Vitis vinifera genome. BMC Plant Biol, 2016,16(1):96. |
| [42] | Ren C, Liu XJ, Zhang Z, Wang Y, Duan W, Li SH, Liang ZC . CRISPR/Cas9-mediated efficient targeted mutagenesis in Chardonnay ( Vitis vinifera L.). Sci Rep, 2016,6:32289. |
| [43] | Nakajima I, Ban Y, Azuma A, Onoue N, Moriguchi T, Yamamoto T, Toki S, Endo M . CRISPR/Cas9-mediated targeted mutagenesis in grape. PLoS One, 2017,12(5):e0177966. |
| [44] | Wang XH, Tu MX, Wang DJ, Liu JW, Li YJ, Li Z, Wang YJ, Wang XP . CRISPR/Cas9-mediated efficient targeted mutagenesis in grape in the first generation. Plant Biotechnol J, 2018,16(4):844-855. |
| [45] | Ren C, Guo YC, Kong JH, Lecourieux F, Dai ZW, Li SH, Liang ZC . Knockout of VvCCD8 gene in grapevine affects shoot branching. BMC Plant Biol, 2020,20(1):47. |
| [46] | Malnoy M, Viola R, Jung MH, Koo OJ, Kim S, Kim JS, Velasco R, Nagamangala Kanchiswamy C . DNA-free genetically edited grapevine and apple protoplast using CRISPR/Cas9 ribonucleoproteins. Front Plant Sci, 2016,7:1904. |
| [47] | Nishitani C, Hirai N, Komori S, Wada M, Okada K, Osakabe K, Yamamoto T, Osakabe Y . Efficient genome editing in apple using a CRISPR/Cas9 system. Sci Rep, 2016,6:31481. |
| [48] | Charrier A, Vergne E, Dousset N, Richer A, Petiteau A, Chevreau E . Efficient targeted mutagenesis in apple and first time edition of pear using the CRISPR-Cas9 system. Front Plant Sci, 2019,10:40. |
| [49] | Chang LJ, Wu S, Tian L . Effective genome editing and identification of a regiospecific gallic acid 4-O-glycosyltransferase in pomegranate ( Punica granatum L.). Hortic Res, 2019,6:123. |
| [50] | Breitler JC, Dechamp E, Campa C, Rodrigues LAZ, Guyot R, Marraccini P, Etienne H . CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora. Plant Cell Tiss Org, 2018,134(3):383-394. |
| [51] | Fister AS, Landherr L, Maximova SN, Guiltinan MJ . Transient expression of CRISPR/Cas9 machinery targeting TcNPR3 enhances defense response in Theobroma cacao. Front Plant Sci, 2018,9:268. |
| [52] | Shi Z, Zhang YF, Maximova SN, Guiltinan MJ . TcNPR3 from Theobroma cacao functions as a repressor of the pathogen defense response. BMC Plant Biol, 2013,13(1):204. |
| [53] | Odipio J, Alicai T, Ingelbrecht I, Nusinow DA, Bart R, Taylor NJ . Efficient CRISPR/Cas9 genome editing of phytoene desaturase in cassava. Front Plant Sci, 2017,8:1780. |
| [54] | Gomez MA, Lin ZD, Moll T, Chauhan RD, Hayden L, Renninger K, Beyene G, Taylor NJ, Carrington JC, Staskawicz BJ, Bart RS . Simultaneous CRISPR/Cas9- mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence. Plant Biotechnol J, 2019,17(2):421-434. |
| [55] | Mehta D, Stürchler A, Anjanappa RB, Zaidi SS, Hirsch- Hoffmann M, Gruissem W, Vanderschuren H . Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses. Genome Biol, 2019,20(1):80. |
| [56] | Rybicki EP . CRISPR-Cas9 strikes out in cassava. Nat Biotechnol, 2019,37(7):727-728. |
| [57] | Fan YT, Xin SC, Dai XM, Yang XF, Huang HS, Hua YW . Efficient genome editing of rubber tree ( hevea brasiliensis) protoplasts using CRISPR/Cas9 ribonucleoproteins. Ind Crop Prod, 2020,146:112146. |
| [58] | Wu ZP, Wu GJ . Research progress of energy plant Jatropha curcas L. Chin Bull Life Sci, 2014,26(5):497-502. |
| [58] | 吴平治, 吴国江 . 木本油料植物麻疯树的研究进展. 生命科学, 2014,26(5):497-502. |
| [59] | Pan BZ, Xu ZF . Benzyladenine treatment significantly increases the seed yield of the biofuel plant jatropha curcas. Plant Growth Regul, 2011,30(2):166-174. |
| [60] | Cai L, Zhang L, Fu QT, Xu ZF . Identification and expression analysis of cytokinin metabolic genes IPTs, CYP735A and CKXs in the biofuel plant Jatropha curcas. Peer J, 2018,6:e4812. |
| [61] | van Zeijl A, Wardhani TAK, Seifi Kalhor M, Rutten L, Bu F, Hartog M, Linders S, Fedorova EE, Bisseling T, Kohlen W, Geurts R . CRISPR/Cas9-mediated mutagenesis of four putative symbiosis genes of the tropical tree Parasponia andersonii reveals novel phenotypes. Front Plant Sci, 2018,9:284. |
| [62] | Lin CS, Hsu CT, Yang LH, Lee LY, Fu JY, Cheng QW, Wu FH, Hsiao HC, Zhang YS, Zhang R, Chang WJ, Yu CT, Wang W, Liao LJ, Gelvin SB, Shih MC . Application of protoplast technology to CRISPR/Cas9 mutagenesis: from single‐cell mutation detection to mutant plant regeneration. Plant Biotechnol J, 2018,16(7):1295-1310. |
| [63] | Ye SW, Chen G, Kohnen MV, Wang WJ, Cai CY, Ding WS, Wu C, Gu LF, Zheng YS, Ma XQ, Lin CT, Zhu Q . Robust CRISPR/Cas9 mediated genome editing and its application in manipulating plant height in the first generation of hexaploid Ma bamboo ( Dendrocalamus latiflorus Munro). Plant Biotechnol J, 2020, doi: 10.1111/pbi.13320. |
| [64] | Xie SS, Zhang Y, Zhang LS, Li GL, Zhao CZ, Ni P, Zhao SH, . sgRNA design for the CRISPR/Cas9 system and evaluation of its off-target effects. Hereditas(Beijing), 2015,37(11):1125-1136. |
| [64] | 谢胜松, 张懿, 张利生, 李广磊, 赵长志, 倪攀, 赵书红 . CRISPR/Cas9系统中sgRNA设计与脱靶效应评估. 遗传, 2015,37(11):1125-1136. |
| [65] | Meng XB, Yu H, Zhang Y, Zhuang FF, Song XG, Gao SS, Gao CX, Li JY . Construction of a genome-wide mutant library in rice using CRISPR/Cas9. Mol Plant, 2017,10(9):1238-1241. |
| [66] | Shan QW, Gao CX . Research progress of genome editing and derivative technologies in plants. Hereditas(Beijing), 2015,37(10):953-973. |
| [66] | 单奇伟, 高彩霞 . 植物基因组编辑及衍生技术最新研究进展. 遗传, 2015,37(10):953-973. |
| [67] | Zong Y, Gao CX . Progress on base editing systems. Hereditas (Beijing), 2019,41(9):777-800. |
| [67] | 宗媛, 高彩霞 . 碱基编辑系统研究进展. 遗传, 2019,41(9):777-800. |
/
| 〈 |
|
〉 |