遗传 ›› 2006, Vol. 28 ›› Issue (7): 769-777.

• 研究快报 • 上一篇    下一篇

藏鸡线粒体全基因组序列的测定和分析

童晓梅1,2,4,梁 羽2,3,王 威2,3,徐树青1,2,郑晓光1,2,3,汪 建3,于 军3   

  1. 1.中国科学院昆明动物研究所,昆明 650223; 2.青藏高原人与环境联合研究中心,拉萨 850000;
    3.中国科学院北京基因组研究所,北京 101300; 4.中国科学院研究生院, 北京 100049
  • 收稿日期:2006-03-29 修回日期:2006-04-17 出版日期:2006-07-10 发布日期:2006-07-10
  • 通讯作者: 郑晓光

Complete Sequence and Gene Organization of Tibetan Chicken Mitochondrial Genome

TONG Xiao-Mei 1,2,4, LIANG Yu 2,3, WANG Wei 2,3, XU Shu-Qing 1,2,
ZHENG Xiao-Guang 1,2,3, WANG Jian 3, YU Jun 3   

  1. 1.Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223,China;
    2.Research Center of Human and Environment on the Tibetan Plateau, Lasa 85000,China;
    3.Beijing Genomics Institute,Chinese Academy of Sciences, Beijing 101300,China;
    4.Graduate School, Chinese Academy of Sciences, Beijing 100049,China
  • Received:2006-03-29 Revised:2006-04-17 Online:2006-07-10 Published:2006-07-10
  • Contact: ZHENG Xiao-Guang

摘要: 通过PCR扩增,测序,拼接,获得藏鸡(Tibetan Chicken)线粒体全基因组序列并进行数据分析处理。藏鸡线粒体全基因组序列全长16783bp,共有13个蛋白质编码基因、2个rRNA基因、22个tRNA基因和1个D-loop区。模拟电子酶切结果显示,藏鸡DraI酶的酶切结果和先前报道的原鸡,茶花鸡,尼西鸡和大理漾濞黄鸡的酶切结果都不相同,为藏鸡特有。基于D-loop区全序列和13个蛋白质编码基因序列,采用N-J算法与原鸡属4个种,3个亚种和3个家鸡品系构建系统进化树:初步确定藏鸡起源于红原鸡,与家鸡中的来航鸡、白洛克鸡亲缘关系最近,但是藏鸡的进化与来航鸡、白洛克鸡这两个家鸡品系又显得相对独立。推测可能原因是藏鸡的祖先在进入高原以后处于相对封闭的环境,从而形成了独特群体遗传特性。

关键词: 基因结构, 系统进化树, 线粒体基因组, 藏鸡

Abstract: Using PCR amplification, sequencing and assembling, we obtained the complete mitochondrial genome of tibetan chicken. The complete mitochondrial genome was 16783bp in length. It contained 37 genes (13 protein coding genes, 2 rRNA, 22 tRNA) and a control region. The simulated restriction enzymes map revealed the pattern of DraI restriction endonucleases was specialized in tibetan chicken. Phylogenetic trees based on the D-loop locus and the 13 protein coding genes by Neighbor-joining analysis indicated that the red junglefowl was the direct ancestor of tibetan chicken and tibetan chicken was closest to white leghorn and white p1ymouth rock. However, the evolution of Tibetan chicken appeared to be relatively independent from that of white leghorn and white p1ymouth rock. The possible reasons were that the ancestor of Tibetan chicken lived in a relatively isolated environment after entered into high altitude and developed individual genetic characters.

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