遗传 ›› 2004, Vol. 26 ›› Issue (2): 205-210.

• 论文 • 上一篇    下一篇

利用DNA序列构建系统树的方法介绍

李涛 赖旭龙1 钟扬2 LI Tao1; LAI Xu-long1; ZHONG Yang2   

  1. 1.中国地质大学地球科学学院,武汉430074; 2.复旦大学生命科学学院,上海 200433 1.Faculty of Earth Sciences,China University of Geosciences,Wuhan 430074,China;2.School of Life Sciences, Fudan University ,Shanghai 200433,China
  • 收稿日期:1900-01-01 出版日期:2004-03-28 发布日期:2004-03-28

Introduction to the Methods of Constructing Phylogenetic Trees with DNA sequences

  • Received:1900-01-01 Online:2004-03-28 Published:2004-03-28

摘要:
利用DNA序列进行系统发生分析是分子进化研究的必要手段。构建系统树的方法有距离法、简约法、最大似然法以及贝叶斯推断法等。要解决特定的系统发生问题,首先要挑选合理的分类群及序列,尽量减少数据的偏倚,然后选择构树方法,最后还要对结果进行评价并给出进化学上的解释。本文讨论了挑选数据的原则及存在的问题,介绍了几种构树方法的基本原理及步骤,并列举了它们的优缺点。Abstract: Construction of phylogenetic trees is a key means in molecular evolutionary studies. The methods of constructing phylogenetic trees include the distance-based methods, parsimony, maximum likelihood, and Bayesian inference methods. To resolve a special problem about phylogeny, several notices are necessary: first, to select the reasonable data at less bias as possible; second, to choose the proper method to reconstruct phylogenetic tree; third, to evaluate the conclusions and explain them on the field of evolution. The present paper provides a brief introduction of the principles of data selection and tree-construction methods, and discusses about their advantage and disadvantage points.

关键词: 系统树, 距离法, 最大似然法, 简约法, 贝叶斯推断法
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