细菌基因组同源重组：量化与鉴定

doi:10.16288/j.yczz.15-382

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HEREDITAS(Beijing) ›› 2016, Vol. 38 ›› Issue (2): 137-143.doi: 10.16288/j.yczz.15-382

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Homologous recombination among bacterial genomes: the measurement and identification

Xianwei Yang, Ruifu Yang, Yujun Cui

State Key Laboratory of Pathogen and Biosecurity, Institute of Microbiology and Epidemiology, Beijing 100071, China

Received:2015-09-08 Revised:2015-12-04 Online:2016-02-20 Published:2015-12-30

Abstract

Abstract: Homologous recombination is one of important sources in shaping the bacterial population diversity, which disrupts the clonal relationship among different lineages through horizontal transferring of DNA-segments. As consequence of blurring the vertical inheritance signals, the homologous recombination raises difficulties in phylogenetic analysis and reconstruction of population structure. Here we discuss the impacts of homologous recombination in inferring phylogenetic relationship among bacterial isolates, and summarize the tools and models separately used in recombination measurement and identification. We also highlight the merits and drawbacks of various approaches, aiming to assist in the practical application for the analysis of homologous recombination in bacterial evolution research.

Key words: homologous recombination, clonal, genome, phylogenetic, population structure

Xianwei Yang, Ruifu Yang, Yujun Cui. Homologous recombination among bacterial genomes: the measurement and identification[J]. HEREDITAS(Beijing), 2016, 38(2): 137-143.

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Homologous recombination among bacterial genomes: the measurement and identification

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