长雄野生稻有利基因的发掘与利用

doi:10.16288/j.yczz.23-154

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Hereditas(Beijing) ›› 2023, Vol. 45 ›› Issue (9): 765-780.doi: 10.16288/j.yczz.23-154

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The discovery and utilization of favorable genes in Oryza longistaminata

Xiaoping Lian(), Guangfu Huang, Yujiao Zhang, Jing Zhang, Fengyi Hu(), Shilai Zhang()

Key Laboratory of Biology and Germplasm Innovation of Perennial Rice, Ministry of Agriculture and Rural Affairs, Research Center of Perennial Rice Engineering and Technology in Yunnan, School of Agriculture, Yunnan University, Kunming 650091, China

Received:2023-05-31 Revised:2023-07-29 Online:2023-09-20 Published:2023-08-18
Contact: Fengyi Hu,Shilai Zhang E-mail:lianxp@ynu.edu.cn;hfengyi@ynu.edu.cn;shilaizhang@ynu.edu.cn
Supported by:
Yunnan Basic Research Project(202101AT070164);Yunnan Key R&D Project(202102AE090008);Talent Supporting and Platform Construction Project from Yunnan Provincial Science and Technology Department(202305AC160015);Yunnan Postdoctoral Sustentation Fund, China(240877)

Abstract

Abstract:

Asian cultivated rice has been domesticated from ancestors of the wild rice species Oryza rufipogon. During this process, important changes have occurred in many agronomic traits, such as plant height, grain shattering, and panicle shape, and the yield has also greatly increased. However, many favored traits (e.g., stress resistance) have been lost. The genome of O. longistaminata is of the same AA type as O. sativa, harboring many genes conferring resistance to biotic and abiotic stresses, and it is considered as a potential gene pool for genetic improvement of O. sativa. In this review, we summarize the basic research on O. longistaminata, including its resistance to biotic and abiotic stresses, its rhizome traits, and other traits that are of potential application value, such as bacterial blight resistance, drought resistance, heat tolerance, self-incompatibility, nitrogen efficiency, and high yield. Furthermore, we present the current applied research progress on perennial rice breeding based on the rhizome trait of O. longistaminata. Lastly, the possibility of de novo domestication of O. longistaminata is discussed. We expect this article to provide information to enhance the basic research of O. longistaminata and accelerate the genetic improvement of cultivated rice.

Key words: Oryza longistaminata, favorable genes, perennial rice, genome editing, de novo domestication

Xiaoping Lian, Guangfu Huang, Yujiao Zhang, Jing Zhang, Fengyi Hu, Shilai Zhang. The discovery and utilization of favorable genes in Oryza longistaminata[J]. Hereditas(Beijing), 2023, 45(9): 765-780.

Figures/Tables 3

Table 1

Fig. 1

Table 2

The characteristics that need to be improved in de novo domestication of O. longistaminata and the corresponding key domestication genes in cultivated rice"

性状	QTL/基因	染色体	日本晴基因组 ID号	与长雄野生稻基因组比对结果 (一致性与对空情况)	参考文献
株高	SD1	1	Os01g0883800	93% (2927/3158), 5% (157/3158)	[98,99]
株高/分蘖	D10 (OsCCD8)	1	Os01g0746400	97% (3040/3130), 2% (67/3130)	[98,100]
株型(匍匐/直立)	PROG1	7	Os07g0153600	90% (824/913), 7% (62/913)	[101,102,103]
株型(分蘖角)	TAC1 (SPK)	9	Os09g0529300	98% (3109/3160), 1% (22/3160)	[104,105]
穗型(穗粒数)	Gn1a	1	Os01g0197700	96% (1655/1718), 1% (25/1718)	[106,107]
穗型(直立密穗)	EP2 (DEP2)	7	Os07g0616000	98% (6120/6246), 0% (26/6246)	[108,109,110]
种子落粒性	qSH1	1	Os01g0848400	98% (4430/4522), 1% (48/4522)	[111,112]
	Sh4	4	Os04g0670900	93% (1523/1629), 4% (62/1629)	[113,114,115]
	SH5	5	Os05g0455200	97% (2640/2723), 2% (60/2723)	[116,117]
	SHAT1	4	Os04g0649100	95% (3357/3523), 2% (112/3523)	[118]
种子休眠	Sdr4	7	Os07g0585700	96% (1007/1047), 3% (27/1047)	[119~121]
种皮颜色	Rc	7	Os07g0211500	98% (3387/3472), 1% (36/3472)	[122~124]
种皮颜色	Rd	1	Os01g0633500	96% (1828/1897), 2% (39/1897)	[123,125]
芒	LABA1	4	Os04g0518800	98% (4053/4134), 1% (34/4134)	[126,127]
芒	RAE2 (OsEPFL1)	8	Os08g0485500	93% (795/855), 4% (38/855)	[128~130]
抽穗期	Hd2 (DTH7)	7	Os07g0695100	99% (3307/3346), 0% (11/3346)	[131]
	Hd5/DTH8/Ghd8	8	Os08g0174500	94% (1857/1982), 4% (40/1982)	[132,133,134,135]
	Ehd1 (EF1)	10	Os10g0463400	98% (2965/3022), 0% (5/3022)	[136,137]
	RFT1	6	Os06g0157500	96% (1593/1660), 1% (24/1660)	[138,139]
	Hd3a (FT)	6	Os06g0157700	94% (1381/1467), 3% (39/1467)	[138,139]
	Hd6	3	Os03g0762000	96% (4042/4226), 2% (74/4226)	[140]
自交不亲和性	OlSS1、OlSS2、OlSP	5	-	*	[36]
地下茎有无	Rhz2、Rhz3	3、4	-	*	[26,77,78]
地下茎数量	QRn2、QRn3、QRn5、QRn6、QRn7、QRn10	2、3、5、6、7、10	-	*	[26,77,78]
地下茎长度	QRl1、QRl6、QRl7	1、6、7	-	*	[26,77,78]
地下茎丰度	QRbd2	2	-	*	[26,77,78]

Table 2

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性状	QTL/基因位点	染色体	克隆	应用	性状类型	参考文献
抗白叶枯	Xa21	11	是	是	生物胁迫抗性	[19,20,42,43]
抗稻瘟病	Pi57(t)	12	否	否	生物胁迫抗性	[51,52]
抗黄斑驳病毒	-	-	否	-	生物胁迫抗性	[53,54]
抗东格鲁病毒	-	-	否	是	生物胁迫抗性	[55,56]
抗根结线虫	-	-	否	否	生物胁迫抗性	[57,58]
抗三化螟	-	-	否	否	生物胁迫抗性	[59,60,61,62]
抗螟蛾科昆虫	-	-	否	否	生物胁迫抗性	[62]
抗黑尾叶蝉	qGRH2、qGRH4、qGRH5、qGRH11	2、4、5、11	否	否	生物胁迫抗性	[63]
抗旱	qDWR8.1/MH08g0242800	8	否	否	非生物胁迫抗性	[21,22,64]
耐盐	qSIS2/qWCSST2/qRWCS2	2	否	否	非生物胁迫抗性	[66]
耐热	-	-	否	否	非生物胁迫抗性	[2,65]
高配合力	qGCA1、qSCA8	1、8	否	否	其他性状	[67]
高异交率(柱头形态相关)	qSTGL8.0	8	否	否	其他性状	[68]
种子活力	q9SL1.1/q6SL1.1/q3SL1.1、9GR8.1/q9GP8.1	1、8	否	否	其他性状	[69]
低肥高产	20个QTL	-	否	否	其他性状	[38]
高产	-	1、8(NIL)	否	否	其他性状	[41,70]
高光合	qPn8.1、qBM1.1/qDBM1.1	1、8	否	否	其他性状	[71,72]
穗粒数	qSPP2.2	2	否	否	其他性状	[74]
种间不育	S40	1	是	否	其他性状	[75,76]
自交不亲和	OlSS1、OlSS2、OlSP	5	否	否	其他性状	[37]

The discovery and utilization of favorable genes in Oryza longistaminata

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