基因芯片研究植物逆境基因表达新进展

doi:10.3724/SP.J.1005.2009.01192

[an error occurred while processing this directive]

HEREDITAS ›› 2009, Vol. 31 ›› Issue (12): 1192-1204.doi: 10.3724/SP.J.1005.2009.01192

• en • Previous Articles Next Articles

Advances of microarray analysis on plant gene expression under en-vironmental stresses

LIN Hai-Jian, ZHANG Zhi-Ming, SHEN Ya-Ou, GAO Shi-Bin, PAN Guang-Tang

Institute of Maize Research, Sichuan Agricultural University, Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Ya'an 625014, China

Received:2009-04-12 Revised:2009-05-17 Online:2009-12-10 Published:2009-12-10
Contact: PAN Guang-Tang E-mail:pangt1956@yahoo.com.cn

Abstract

Abstract:

Different stressed conditions impair plant growth and further, cause great loss of crop yield and even lead to lose production completely. Increasing resistance/tolerance of crops under stressed conditions is a major goal of numerous plant breeders, and many elegant works are focusing on this area to uncover these complicated mechanisms underlying it. However, the traditional strategies including physiological and biochemical methods, as well as studies on a few genes, can not well understand the overall biological mechanism. Microarray analysis opens a door to uncover these cryptic mechanisms, and has the ability of detecting gene transcription and regulation at genomic level in different plant tissues. And works in association with related methods of proteomics and metabolomics. Therefore, it is possible to locate genes in certain key metabolism pathways. Through these procedures, it is also possible to look for critical genes in the pathway and to well understand the molecular mechanism of resistance/tolerance. These results can be as a guidance for increasing the re-sistance/tolerance of stressed conditions using biotechnology methods in future. This paper mainly focused on and dis-cussed the advances of microarray analysis of stressed conditions-related genes in plants.

Key words: biotic/abiotic stresses, gene chip, stress response, expression and regulation

LIN Hai-Jian, ZHANG Zhi-Meng, CHEN E-Ou, GAO Shi-Bin, BO Guang-Tang. Advances of microarray analysis on plant gene expression under en-vironmental stresses[J]. HEREDITAS, 2009, 31(12): 1192-1204.

References 21

[1]	Vance CP. Symbiotic nitrogen fixation and phosphorus acquisition. Plant nutrition in a world of declining renew-able resources. Plant Physiol, 2001, 127(2): 390-397.
[2]	Madhava Rao KV, Raghavendra AS, Janardhan Reddy K. Physiology and Molecular Biology of Stress Tolerance in Plants. Hardcover. (Eds.). XV. Springer, 2006.
[3]	Yokoi S, Bressan RA, Hasegawa PM. Salt Stress Tolerance of Plants. JIRCAS Working Report, 2002, 25-33. [4] Raghothama KG. Phosphate acquisition. Annu Rev Plant Physiol Plant Mol Biol, 1999, 550: 665-693.
[5]	Beck EH, Fettig S, Knake CA, Hartig K, Bhattarai T. Spe-cific and unspecific responses of plants to cold and drought stress. J Biosci, 2007, 32(3): 501-510.
[6]	Mengel K, Kirkby EA. Principles of Plant Nutrition. Bern, Switzerland:International Potash Institute. 2nd edition. 1979.
[7]	Fernandes MS, Pereyra Rossiello RO. Mineral nitrogen in plant physiology and plant nutrition. Critical Rev Plant Sci, 1995, 14(2): 111-148.
[8]	Mori S. Iron acquisition by plants. Curr Opin Plant Biol, 1999, 2(3): 250-253.
[9]	Zhang H, Forde BG. Regulation of Arabidopsis root de-velopment by nitrate availability. J Exp Bot, 2000, 51(342): 51-59.
[10]	Raghothama KG, Karthikeyan AS. Phosphate acquisition. Plant Soil, 2005, 274(1-2): 37-49.
[11]	Rosolem CA, Rossetto CAV, Fernandes DM, Ishimura I. Potassium fertilization, root morphology and potassium absorption by soybean. J Plant Nutr, 1993, 16(3): 479-492.
[12]	Jiang CF, Gao XH, Liao LL, Harberd NP, Fu XD. Phos-phate starvation root architecture and anthocyanin accu-mulation responses are modulated by the gibberellin-DELLA signaling pathway in Arabidopsis. Plant Physiol, 2007, 145(4): 1460-1470.
[13]	Crawford NM, Glass ADM. Molecular physiological as-pects of nitrate uptake in plants. Trends Plant Sci, 1998, 3(10): 389-395.
[14]	Thomine S, Lelièvre F, Debarbieux E, Schroeder JI, Hélène BB. AtNRAMP3, a multispecific vacuolar metal transporter involved in plant responses to iron deficiency. Plant J, 2003, 34(5): 685-695.
[15]	Yi KK, Wu ZC, Zhou J, Du LM, Guo LB, Wu YR, Wu P. OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice. Plant Physiol, 2005, 138(4): 2087-2096.
[16]	Remans T, Nacry P, Pervent M, Girin T, Tillard P, Lepetit M, Gojon A. A central role for the nitrate transporter NRT2.1 in the integrated morphological and physiological responses of the root system to nitrogen limitation in Arabidopsis. Plant Physiol, 2006, 140(3): 909-921.
[17]	Wang R, Guegler K, LaBrie ST, Crawford NM. Genomic analysis of a nutrient response in Arabidopsis reveals di-verse expression patterns and novel metabolic and poten-tial regulatory genes induced by nitrate. Plant Cell, 2000, 12(8): 1491-1509.
[18]	Wang RC, Okamoto M, Xing XJ, Crawford NM. Mi-croarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1 000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol, 2003, 132(2): 556-567.
[19]	Williams LE, Miller AJ. Transporters responsible for the uptake and partitioning of nitrogenous solutes. Annu Rev Plant Physiol Plant Mol Biol, 2001, 52: 659-688.
[20]	Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastruc-ture of Arabidopsis in response to nitrogen. Plant Physiol, 2004, 136(1): 2483-2499.
[21]	Lian XM, Wang SP

Metrics

Comments

www.chinagene.cn
备案号：京ICP备09063187号

Advances of microarray analysis on plant gene expression under en-vironmental stresses

PDF (PC)

Knowledge

Abstract

Cite this article

share this article

References 21

Related Articles 15

Recommended Articles

Metrics

Comments

[1]	Liwen Wu, Jie Zeng, Yunxin Xue, Xilin Zhao. Progress on the function and regulatory mechanisms of bacterial Cpx signal transduction system [J]. Hereditas(Beijing), 2021, 43(8): 747-757.
[2]	Zeqin Li,Jintao Li,Jie Bing,Genfa Zhang. The role analysis of APX gene family in the growth and developmental processes and in response to abiotic stresses in Arabidopsis thaliana [J]. Hereditas(Beijing), 2019, 41(6): 534-547.
[3]	Miaoyun Xu, Jiaxu Zhu, Min Zhang, Lei Wang. Advances on plant miR169/NF-YA regulation modules [J]. Hereditas(Beijing), 2016, 38(8): 700-706.
[4]	Xinhua Sun, Pan Jia, Jichao Zhang, Hongyu Pan. Cloning and characterization of a salt responsive gene AcPsbQ1 from Atriplex canescens [J]. HEREDITAS(Beijing), 2015, 37(1): 84-90.
[5]	Xiaoyan Song, Dexiang Zhang, Wenwu Zhang, Congliang Ji, Xiquan Zhang, Qingbin Luo. Gene expression profiling of three tissues of chicken after heat stress treatment by microarray technique [J]. HEREDITAS(Beijing), 2014, 36(8): 800-808.
[6]	Zihan Shi, Zeqin Li, Genfa Zhang. The mechanism of histone lysine methylation of plant involved in gene expression and regulation [J]. HEREDITAS, 2014, 36(3): 208-219.
[7]	ZHANG Tao YANG Zu-Jun. Progress on identification and analysis of DNase I hypersensitive sites in plant genomes [J]. HEREDITAS, 2013, 35(7): 867-874.
[8]	PAN Li-Na. Epigenetic regulation of abiotic stress response in plants to improve the stress tolerance [J]. HEREDITAS, 2013, 35(6): 745-751.
[9]	LI Ze-Qin LI Jing-Xiao ZHANG Gen-Fa. Expression regulation of plant ascorbate peroxidase and its tolerance to abiotic stresses [J]. HEREDITAS, 2013, 35(1): 45-54.
[10]	BAO Wen-Bin, XIE Lan, BO Zhang-Yuan, SHU Jing, DU Zi-Dong, CA Jia-Jia, HUANG Xiao-Guo, SHU Guo-Jiang, TUN Ku-Long. cDNA microarray on differently expressed genes in duodenum in porcine sensitive or resistant to Escherichia coli F18 [J]. HEREDITAS, 2011, 33(1): 60-66.
[11]	DING Yan-Fei, WANG Guang-Yue, FU E-Ping, SHU Cheng. The role of miR398 in plant stress responses [J]. HEREDITAS, 2010, 32(2): 129-134.
[12]	YANG Wen-Jie, WU Yan-Min, TANG Yi-Xiong. Expressing and functional analysis of GmMYBJ6 from soybean [J]. HEREDITAS, 2009, 31(6): 645-653.
[13]	ZHANG Mei, LIU Wei, BI Yu-Ping. Dehydration-responsive element-binding (DREB) transcription factor in plants and its role during abiotic stresses [J]. HEREDITAS, 2009, 31(3): 236-244.
[14]	ZHANG Jue, CAO Mao-Lin, HUANG Yu-Bi, WU Bo-Ji. Study of hrpN_CSDS001 and the gene expression profile of Arabidopsis thaliana induced by Harpin_CSDS001 [J]. HEREDITAS, 2007, 29(5): 629-629―636.
[15]	LI Yan-FenG, ZHANG Qiang, ZHU Da-Hai. The Ubiquitin-Proteasome Proteolytic Pathway and Tumorigenesis [J]. HEREDITAS, 2006, 28(12): 1591-1591~1596.