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HEREDITAS(Beijing) ›› 2016, Vol. 38 ›› Issue (1): 72-81.doi: 10.16288/j.yczz.15-158

• Research Articles • Previous Articles     Next Articles

Genetic analysis of dense and erect panicle 2 allele DEP2-1388 and its application in hybrid rice breeding

Yungao Hu1, 2, Lianan Guo2, Guotao Yang2, Peng Qin1, Cunliu Fan2, Youlin Peng2, Wei Yan3, Hang He3, Shigui Li1   

  1. 1. Rice Research Institute of Sichuan Agricultural University, Chengdu 611130, China;
    2. Rice Research Institute of Southwest University of Science and Technology, Mianyang 621010, China;
    3. College of Life Sciences, Peking University, Beijing 100871, China
  • Received:2015-06-24 Revised:2015-08-12 Online:2016-01-20 Published:2016-01-20
  • Supported by:
    [Project Supported by the National Natural Science Foundation of China (No; 31471475), National Key Technology Support Program ‘Germplasm Creation and New Variety Breeding of High Quality and Disease Resistance in Upper Yangtze River’ (No; 2014BAD01B03), the Open Fund of Engineering Research Center for Biomass Resource Utilizaiton and Modification of Sichuan Province, and the Open Research Fund of State Key Laboratory of Hybrid Rice (Hunan Hybrid Rice Research Center) (No; 2014KF01)]

Abstract: Using ethyl methanesulfonate (EMS) mutagenesis, we isolated an erect panicle mutant, R1338, from indica heavy-panicle restorer Shuhui498. Compared with wild type control, the mutant displayed dwarfism, erect and short panicle, short primary panicle branch, increased grain density, short grain length and increased grain thickness. In addition, the erect panicle architecture of R1388 resulted in significant decreased bending moment and increased resistance to panicle bending. Histocytological analysis indicated that the diameter of uppermost internode, cellulose content and lignin content play important roles in resistance to panicle bending. Genetic analysis revealed that the mutant phenotype was controlled by a semi-dominant nuclear gene. With resequencing and MutMap analysis strategy, we found that one SNP from A to G at the seventh exon of DEP2 resulted in the 928th amino acid substitution from arginine (AGG) to glycine (GGG) in R1338 mutant. Considering the phenotype of other dep2 mutants, the phenotype of R1338 was likely to be caused by the SNP in DEP2. The mutant R1338 and wild type were crossed with several sterile lines which respectively had different panicle types, the combinations generated from R1338 and curve panicle sterile lines showed semi-erect panicle, higher seed setting percentage and heterosis, and the combinations generated from R1388 and erect panicle sterile line with DEP1 showed erect panicle by gene additive effect. Moreover, the combinations with semi-erect panicle had superior light transmittance and stronger light intensity, which improved efficiency of light utilization to intermediate and subjacent leaves compared to the combinations with curved panicle. This study provides a good strategy to solve the problem of population density in three-line hybrid rice.

Key words: rice, erect panicle, gene mapping, population density, breeding application