遗传 ›› 2024, Vol. 46 ›› Issue (2): 140-148.doi: 10.16288/j.yczz.23-262
收稿日期:
2023-10-23
修回日期:
2023-12-22
出版日期:
2024-02-20
发布日期:
2024-01-05
通讯作者:
崔玉军
E-mail:mengncui@163.com;cuiyujun.new@gmail.com
作者简介:
崔梦楠,硕士,实验师,高通量测序和数据解读。E-mail:Mengnan Cui(), Yan Guo, Yarong Wu, Guangqian Pei, Yujun Cui()
Received:
2023-10-23
Revised:
2023-12-22
Published:
2024-02-20
Online:
2024-01-05
Contact:
Yujun Cui
E-mail:mengncui@163.com;cuiyujun.new@gmail.com
摘要:
作为生命科学和医学领域中的关键性支撑技术,高通量测序已得到快速发展并日趋成熟。该技术工作流程可分为核酸提取、文库构建、上机测序、数据分析等,其中文库构建是承上启下的关键步骤,文库构建的效果受制于上游样品质量,同时会对测序数据产出后的数据分析造成影响。对文库构建质量控制技术的选择和实施是提高结果可靠性、降低测序数据误差的重要保证。本文对文库构建质量控制技术进行深入综述,总结评价其原理、优缺点、适用范围,并对实际应用场景中相关技术的选择进行了论述,以期为科研人员、疾病预防控制人员等在选择文库质量控制技术时提供理论依据与参考,从而促进高通量测序工作的质量和效率。
崔梦楠, 郭彦, 武雅蓉, 裴广倩, 崔玉军. 高通量测序文库质量控制技术研究进展[J]. 遗传, 2024, 46(2): 140-148.
Mengnan Cui, Yan Guo, Yarong Wu, Guangqian Pei, Yujun Cui. Progress on the quality control technology of next generation sequencing library[J]. Hereditas(Beijing), 2024, 46(2): 140-148.
表1
不同文库浓度评价技术的比较"
类别 | 紫外吸收技术 | 荧光染料技术 | qPCR(SYBR-Green) | qPCR(TaqMan) | ddPCR |
---|---|---|---|---|---|
典型仪器 | NanoDrop | Qubit | ABI7500 | ABI7500 | qx200 |
投入量(μL) | 1 | 1~20 | 2 | 2 | 2 |
定量范围 | 2~3700 ng/μLa | 10 pg/μL~100 ng/μLb | 0.00083~8.3pmol/L[ | 0.068~6.8 pmol/L[ | 1~105个拷贝c |
单次检测量 | 1 | 1 | ≤96 | ≤96 | ≤96 |
单次检测时间 | 30 s | 1 min | 2.5 h | 2.5 h | 微滴生成<2 min/ 8 个,PCR反应时间2 h,微滴检测< 10 min/个 |
试剂成本/单样品 (美元) | <0.5 | 0.7 | 3.0 | 5.9 | 7~9.8 |
优点 | 操作简单、检测速度快、成本低 | 操作简单、成本较低,可以特异性区分DNA、RNA,检测灵敏度高、重复性好 | 不需要设计荧光探针,灵活,成本较低,能区分文库两端是否连接接头 | 需要设计荧光探针,成本较低,能区分文库两端是否连接接头 | 绝对定量,不依赖于具有特定片段大小的标准品,不依赖于校准物的扩增效率,准确度更高、置信度和可重复性更好 |
缺点 | 对DNA、RNA、蛋白质没有选择性,受杂质影响大,精度差 | 无法区分文库两端是否连接接头 | 不能区分接头二聚体,依赖于生物分析仪对文库片段大小的检测 | 不能区分接头二聚体,依赖于生物分析仪对文库片段大小的检测 | 成本较高 |
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