遗传 ›› 2008, Vol. 30 ›› Issue (11): 1499-1505.doi: 10.3724/SP.J.1005.2008.01499

• 研究报告 • 上一篇    下一篇

茄子SmU2AF基因的可变剪接

罗艳1, 2;王瑛1   

  1. 1. 中国科学院武汉植物园, 武汉 430074;
    2. 中国科学院研究生院, 北京 100049
  • 收稿日期:2008-03-10 修回日期:2008-05-08 出版日期:2008-11-10 发布日期:2008-11-10
  • 通讯作者: 王瑛

Alternative splicing of SmU2AFin Solanum melongena L.

LUO Yan1, 2;WANG Ying1   

  1. 1. Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China;
    2. Graduate School, Chinese Academy of Sciences, Beijing 100049, China
  • Received:2008-03-10 Revised:2008-05-08 Online:2008-11-10 Published:2008-11-10
  • Contact: WANG Ying

摘要: 摘要: U2AF(U2 snRNP auxiliary factor)是参与前体mRNA剪接的重要辅助因子, 在进化上具有较高保守性。文章根据茄子BAC 77N19(GenBank登录号: EF517791)的基因组序列信息和烟草NpU2AF65a和NpU2AF65b基因的全长cDNA序列, 设计特异引物, 经cDNA末端快速扩增法(RACE)获得了1 986 bp的茄子同源基因(SmU2AF65)全长cDNA, GenBank登录号为EU543263。序列分析表明该序列包含1 665 bp的可阅读框, 编码554个氨基酸, 在氨基酸序列的C末端有3个保守的RNA识别结构域RRM。RT-PCR分析表明, SmU2AF65基因在不同组织中均有表达,但是该基因通过可变剪接至少能够产生两个转录本, 在根中产生与其他组织中不同的剪切子

关键词: 茄子, U2AF65基因, 可变剪接, 全长cDNA

Abstract: Abstract: U2AF (U2 snRNP auxiliary factor), an essential auxiliary factor for pre-mRNA splicing, is highly conserved across species. Here we report the cloning and expression analysis of the homologous gene (SmU2AF65) encoding the large subunit of U2AF65 in Solanum melongena. Gene specific primers for Rapid Amplification of cDNA Ends (RACE) are de-signed according to the genomic sequence of eggplant BAC 77N19 and the full length cDNA of tobacco NpU2AF65 a and b. The full length cDNA of SmU2AF65 (GenBank accession No. EU543263) contains a complete open reading fragment en-coding a 554 amino acid protein, and the deduced protein contains three conserved RNA recognition domains (RRM). RT-PCR assays indicate that SmU2AF65 is constitutively expressed in leaf, flower, and root, with a different transcript found in root originated from alternative splicing.