遗传 ›› 2009, Vol. 31 ›› Issue (7): 725-731.doi: 10.3724/SP.J.1005.2009.00725

• 研究报告 • 上一篇    下一篇

绵羊H-FABP基因单核苷酸多态性的研究

乔海云1, 2;赵倩君1;姚娜1;卢亚洲1;孟详人1, 3;韩健林1;关伟军1;马月辉1   

  1. 1. 中国农业科学院北京畜牧兽医研究所, 北京100193;
    2. 河北工程大学农学院, 邯郸056000;
    3. 黑龙江省农业科学院畜牧所, 哈尔滨 150086
  • 收稿日期:2008-11-20 修回日期:2009-04-04 出版日期:2009-07-10 发布日期:2009-07-10
  • 通讯作者: 关伟军;马月辉

Study on single nucleotide polymorphisms of H -FABP gene in sheep

QIAO Hai-Yun1, 2;ZHAO Qian-Jun1;YAO Na1;LU Ya-Zhou1;MENG Xiang-Ren1, 3; HAN Jian-Lin1;GUAN Wei-Jun1;MA Yue-Hui1   

  1. 1. Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100193, China;
    2. College of Agriculture, Hebei University of Engineering, Handan 056000, China;
    3. Institute of Animal Science, Heilongjiang Academy of Agricultural Sciences, Harbin 150086, China
  • Received:2008-11-20 Revised:2009-04-04 Online:2009-07-10 Published:2009-07-10
  • Contact: GUAN Wei-Jun;MA Yue-Hui

摘要: 以小尾寒羊(48只)、宁夏滩羊(121只)、滩寒杂交羊F1(23只)、无角陶塞特(48只)、萨福克(24只)5个绵羊群体为实验材料, 利用PCR-SSCP和DNA测序技术对心脏型脂肪酸结合蛋白(H-FABP)基因(GenBank登录号: AY157617)外显子2和内含子2部分序列进行单核苷酸多态性(SNPs)检测及遗传多态性分析。结果表明: (1)引物2的PCR扩增产物中存在981(G/A)、1014(A/C)、1019(T/C) 和1058 (-/G ) 4个SNP位点, 表现为AA、BB、CC、AB、AC、BC、AD、CD和BD 9种基因型, 其中AA为优势基因型。经χ2检验后, 除滩羊和萨福克羊外, 其他群体的基因频率和基因型频率均处于Hardy-Weinberg平衡状态。群体遗传多态性分析表明: 宁夏滩羊、小尾寒羊和无角陶塞特羊3个群体中的多态信息含量(PIC)均处于0.25和0.50之间, 为中度多态, 萨福克羊和滩寒杂交羊F1为低度多态(PIC<0.25), 表明脂肪酸结合蛋白基因在不同绵羊品种中具有单核苷酸多态性, 可以进一步作为候选基因来分析其与肌内脂肪含量性状的关联性。(2)引物4的PCR扩增产物中检测到1个SNP多态位点为2407(T/C), 表现为HH、Hh和 hh 3种基因型, 基因型频率大小为HH>Hh>hh, 经χ2检验后, 在滩羊和无角陶塞特羊中均为达到Hardy-Weinberg平衡状态, 其多态信息含量均为低度多态(PIC<0.25), 而在小尾寒羊、滩寒杂交羊F1和萨福克羊均没有多态出现。

关键词: 单核苷酸多态性, H-FABP基因, 关键词:绵羊

Abstract: Abstract: The Small-tailed Han sheep(48), Ningxia Tan sheep(121), Tan×SH (23), Poll Dorset(48), Suffolk(24) were used to study the single nucleotide polymorphisms (SNPs) of H-FABP gene by PCR-SSCP and DNA sequencing. Five nucleotide variations were found, of which G981A, A1014C, and T1019C resulted in amino acid changes of R327H, E338A, and S340P, respectively. The remaining SNPs were silentmutation. Nine genotypes (AA、BB、CC、AB、AC、BC、AD、CD、BD) were detected in primer 2, of which AA was the major genotype. Except for the Ningxia Tan sheep and Suffolk , all breeds were in accordance with the Hardy-Weinberg equilibrium. Genetic analysis indicated that polymorphism information content (PIC) was low in the Suffolk and Tan×SH , intermediate in other breeds. These results showed that the H-FABP gene had a high level of polymorphism in different sheep breeds, and could be used as a candidate gene to analyze the correlation between its polymorphism and intramuscular fat(IMF ) content in sheep. Three genotypes were detected and defined as HH、Hh、hh in primer 4, and the genotype frequency sequence was HH>Hh>hh , there were no polymorphisms in Small-tailed Han sheep , Tan×SH and Suffolk , and polymorphism information content (PIC) was low in the Ningxia Tan sheep and Poll Dorset.All breeds were in accordance with the Hardy-Weinberg equilibrium.