[1] | Zhang Y. Animal breeding. Beijing: China Agriculture Press, 2001. | [1] | 张沅. 家畜育种学. 北京: 中国农业出版社, 2001. | [2] | Hartl DL, Clark AG. Principles of population genetics. Sunderland, MA: Sinauer Associates, 1997. | [3] | Wright S. Coefficients of inbreeding and relationship. Am Nat, 1922, 56(645): 330-338. | [4] | Leutenegger AL, Prum B, Génin E, Verny C, Lemainque A, Clerget-Darpoux F, Thompson EA. Estimation of the inbreeding coefficient through use of genomic data. Am J Hum Genet, 2003, 73(3): 516-523. | [5] | Woods CG, Valente EM, Bond J, Roberts E. A new method for autozygosity mapping using single nucleotide polymorphisms (SNPs) and EXCLUDEAR. J Med Genet, 2004, 41(8): e101. | [6] | Gibson J, Morton NE, Collins A. Extended tracts of homozygosity in outbred human populations. Hum Mol Genet, 2006, 15(5): 789-795. | [7] | Kirin M, McQuillan R, Franklin CS, Campbell H, McKeigue PM, Wilson JF. Genomic runs of homozygosity record population history and consanguinity. PLoS One, 2010, 5(11): e13996. | [8] | Mcquillan R, Leutenegger AL, Abdel-Rahman R, Franklin CS, Pericic M, Barac-Lauc L, Smolej-Narancic N, Janicijevic B, Polasek O, Tenesa A, MacLeod AK, Farrington SM, Rudan P, Hayward C, Vitart V, Rudan I, Wild SH, Dunlop MG, Wright AF, Campbell H, Wilson JF. Runs of homozygosity in European populations. Am J Hum Genet, 2008, 83(3): 359-372. | [9] | S?lkner J, Feren?akovi? M, Gredler B, Curik I. Genomic metrics of individual autozygosity, applied to a cattle population. In: Paper presented at the 61st Annual Meeting of the European Association of Animal Production. Wageningen: Wageningen Academic Publishers, 2010: 306. | [10] | Purfield DC, Berry DP, McParland S, Bradley DG. Runs of homozygosity and population history in cattle. BMC Genet, 2012, 13: 70. | [11] | McQuillan R, Eklund N, Pirastu N, Kuningas M, McEvoy BP, Esko T, Corre T, Davies G, Kaakinen M, Lyytik?inen LP, Kristiansson K, Havulinna AS, G?gele M, Vitart V, Tenesa A, Aulchenko Y, Hayward C, Johansson A, Boban M, Ulivi S, Robino A, Boraska V, Igl W, Wild SH, Zgaga L, Amin N, Theodoratou E, Pola?ek O, Girotto G, Lopez LM, Sala C, Lahti J, Laatikainen T, Prokopenko I, Kals M, Viikari J, Yang J, Pouta A, Estrada K, Hofman A, Freimer N, Martin NG, K?h?nen M, Milani L, Heli?vaara M, Vartiainen E, R?ikk?nen K, Masciullo C, Starr JM, Hicks AA, Esposito L, Kol?i? I, Farrington SM, Oostra B, Zemunik T, Campbell H, Kirin M, Pehlic M, Faletra F, Porteous D, Pistis G, Widén E, Salomaa V, Koskinen S, Fischer K, Lehtim?ki T, Heath A, McCarthy MI, Rivadeneira F, Montgomery GW, Tiemeier H, Hartikainen AL, Madden PA, d'Adamo P, Hastie ND, Gyllensten U, Wright AF, van Duijn CM, Dunlop M, Rudan I, Gasparini P, Pramstaller PP, Deary IJ, Toniolo D, Eriksson JG, Jula A, Raitakari OT, Metspalu A, Perola M, J?rvelin MR, Uitterlinden A, Visscher PM, Wilson JF, ROHgen Consortium. Evidence of inbreeding depression on human height. PLoS Genet, 2012, 8(7): e1002655. | [12] | Bjelland DW, Weigel KA, Vukasinovic N, Nkrumah JD. Evaluation of inbreeding depression in Holstein cattle using whole-genome SNP markers and alternative measures of genomic inbreeding. J Dairy Sci, 2013, 96(7): 4697-4706. | [13] | Anos G, Wiggans GR, Powell RL. Impact of paternity errors in COW identification on genetic evaluations and international comparisons. J Dairy Sci, 2001, 84(11): 2523-2529. | [14] | Wang Z, Tian YZ, Liu HF. Early survey using blood analysis technology in accuracy of parentchild relationship. China Animal Husbandr Veterin Med, 2005, 32(3): 22-23. | [14] | 汪湛, 田雨泽, 刘和凤. 应用血型分析技术对奶牛亲子关系正确率的调查初报. 中国畜牧兽医, 2005, 32(3): 22-23. | [15] | Chu Q, Zhang Y, Sun DX, Yu Y, Wang YC, Zhang Y. Pedigree Verification of Holstein cows and analysis of factors affecting incorrect paternity based on microsatellite markers. Acta Veterinar Zootech Sin, 2011, 42(2): 163-168. | [15] | 初芹, 张毅, 孙东晓, 俞英, 王雅春, 张沅. 应用微卫星DNA标记分析荷斯坦母牛系谱可靠性及影响因素. 畜牧兽医学报, 2011, 42(2): 163-168. | [16] | Guo G, Zhou L, Liu L, Li D, Zhang SL, Liu JF Ding XD, Zhang Y, Wang YC, Zhang Q, Zhang Y. Parentage inference with single nucleotide polymorphism markers in the Chinese Holstein in Beijing. Acta Veterinar Zootech Sin, 2012, 43(1): 44-49. | [16] | 郭刚, 周磊, 刘林, 李东, 张胜利, 刘剑锋, 丁向东, 张毅, 王雅春, 张勤, 张沅. 利用SNP标记进行北京地区中国荷斯坦牛亲子推断的研究. 畜牧兽医学报, 2012, 43(1): 44-49. | [17] | Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet, 2007, 81(3): 559-575. | [18] | Browning BL, Browning SR. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet, 2009, 84(2): 210-223. | [19] | Sargolzaei M, Iwaisaki H, Colleau JJ. CFC: A tool for monitoring genetic diversity. In: Proceedings of 8th World Congress on Genetics Applied to Livestock Production. Belo Horizonte, Brazil: CD-ROM, 2006: 13-18. | [20] | Zhang Q. Biostatistics. 2nd ed. Beijing: China Agriculture Press, 2007. | [20] | 张勤. 生物统计学(第二版). 北京: 中国农业出版社, 2007. | [21] | Zhang QQ, Guldbrandtsen B, Bosse M, Lund MS, Sahana G. Runs of homozygosity and distribution of functional variants in the cattle genome. BMC Genomics, 2015, 16: 542. | [22] | Vine AE, McQuillin A,Bass NJ,Pereira A,Kandaswamy R,Robinson M,Lawrence J,Anjorin A,Sklar P,Gurling HMD,Curtis D. No evidence for excess runs of homozygosity in bipolar disorder. Psychiatr Genet, 2009, 19(4): 165-170. | [23] | Lencz T, Lambert C, DeRosse P, Burdick KE, Morgan TV, Kane JM, Kucherlapati R, Malhotra AK. Runs of homozygosity reveal highly penetrant recessive loci in schizophrenia. Proc Natl Acad Sci USA, 2007, 104(50): 19942-19947. | [24] | Li MH, Strandén I, Tiirikka T, Sevón-Aimonen ML, Kantanen J. A comparison of approaches to estimate the inbreeding coefficient and pairwise relatedness using genomic and pedigree data in a sheep population. PLoS One, 2011, 6(11): e26256. |
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