[1] | Haimov O, Sinvani H, Dikstein R . Cap-dependent, scanning-free translation initiation mechanisms. Biochim Biophys Acta, 2015,1849(11):1313-1318. | [2] | Lacerda R, Menezes J, Rom?o L . More than just scanning: the importance of cap-independent mRNA translation initiation for cellular stress response and cancer. Cell Mol Life Sci, 2017,74(9):1659-1680. | [3] | Kozak M . The scanning model for translation: an update. J Cell Biol, 1989,108(2):229-241. | [4] | Andreev DE, Dmitriev SE, Loughran G, Terenin IM, Baranov PV, Shatsky IN . Translation control of mRNAs encoding mammalian translation initiation factors. Gene, 2018,651:174-182. | [5] | Hershey JW . Regulation of protein synthesis and the role of eIF3 in cancer. Braz J Med Biol Res, 2010,43(10):920-930. | [6] | Kashiwagi K, Takahashi M, Nishimoto M, Hiyama TB, Higo T, Umehara T, Sakamoto K, Ito T, Yokoyama S . Crystal structure of eukaryotic translation initiation factor 2B. Nature, 2016,531(7592):122-125. | [7] | Wek RC, Jiang HY, Anthony TG . Coping with stress: eIF2 kinases and translational control. Biochem Soc Trans, 2006,34(Pt 1):7-11. | [8] | Kamenska A, Simpson C , Standart N. eIF4E-binding proteins: new factors, new locations, new roles. Biochem Soc T, 2014,42(4):1238-1245. | [9] | Jackson RJ, Hellen CU, Pestova TV . The mechanism of eukaryotic translation initiation and principles of its regulation. Nat Rev Mol Cell Bio, 2010,11(2):113-127. | [10] | Jang SK, Paek KY . Cap-dependent translation is mediated by 'RNA looping' rather than 'ribosome scanning'. RNA Biol, 2015,13(1):1-5. | [11] | Miras M, Miller WA, Truniger V, Aranda MA . Non-canonical translation in plant RNA viruses. Front Plant Sci, 2017,8:494. | [12] | Moshonov S, Elfakess R, Golan-Mashiach M, Sinvani H, Dikstein R . Links between core promoter and basic gene features influence gene expression. BMC Genomics, 2008,9(1):92-102. | [13] | Pesole G, Mignone F, Gissi C, Licciulli F, Liuni S . Structural and functional features of eukaryotic mRNA untranslated regions. Gene, 2001,276(1):73-81. | [14] | Kozak M . A short leader sequence impairs the fidelity of initiation by eukaryotic ribosomes. Gene Expr, 1991,1(2):111-115. | [15] | Kozak M . Effects of long 5' leader sequences on initiation by eukaryotic ribosomes in vitro. Gene Expr, 1991,1(2):117-125. | [16] | Pisarev AV, Kolupaeva VG, Yusupov MM, Hellen CU, Pestova TV . Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J, 2008,27(11):1609-1621. | [17] | Kozak M . Pushing the limits of the scanning mechanism for initiation of translation. Gene, 2002,299(2):1-34. | [18] | Guo S , Lu H. Conjunction of G-quadruplex and stem-loop in the 5′ untranslated region of mouse hepatocyte nuclear factor 4-alpha1 mediates strong inhibition of protein expression.Mol Cell Biochem, 2018, . | [19] | Kozak M . Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Pro Natl Acad Sci USA, 1990,87(21):8301-8305. | [20] | Mokrejš M, Mašek T, Vopálenský V, Hlubucek P, Delbos P, Pospíšek M . IRE site—a tool for the examination of viral and cellular internal ribosome entry sites. Nucleic Acids Res, 2010,38(Database issue):D131-D136. | [21] | Spriggs KA, Bushell M, Willis AE . Translational regulation of gene expression during conditions of cell stress. Mol Cell, 2010,40(2):228-237. | [22] | Braunstein S, Karpisheva K, Pola C, Goldberg J, Hochman T, Yee H, Cangiarella J, Arju R, Formenti SC, Schneider RJ . A Hypoxia-controlled cap-dependent to cap-independent translation switch in breast cancer. Mol Cell, 2007,28(3):501-512. | [23] | Medenbach J, Seiler M, Hentze MW . Translational control via protein regulated upstream open reading frames. Cell, 2011,145(6):902-913. | [24] | Meijer HA, Thomas AA . Control of eukaryotic protein synthesis by upstream open reading frames in the 5'-untranslated region of an mRNA. Biochem J, 2002,367(Pt 1):1-11. | [25] | Ryabova LA, Pooggin MM, Hohn T . Viral strategies of translation initiation: ribosomal shunt and reinitiation. Prog Nucleic Acid Res Mol Biol, 2002,72:1-39. | [26] | 陈宜亭, 张凤, 赵佳, 于家峰, 沙玉杰, 王吉华 . 原核生物基因组肽编码sORFs分布及功能特征. 生物化学与生物物理进展, 2018,45(1):59-67. | [26] | Chen YT, Zhang F, Zhao J, Yu JF, Sha YJ, Wang JH . Sequence and function analysis of peptide coding small open reading frames in prokaryotic genomes. Prog Biochem Biophys, 2018,45(1):59-67. | [27] | Hellens R, Brown C, Chisnall M, Waterhouse P, Macknight R . The emerging world of small ORFs. Trends Plant Sci, 2016,21(4):317-328. | [28] | Jang SK, Kräusslich HG, Nicklin MJ, Duke G, Palmenberg A, Wimmer E . A segment of the 5' nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation. J Virol, 1988,62(8):2636-2643. | [29] | Pelletier J, Sonenberg N . Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA. Nature, 1988,334(6180):320-325. | [30] | 赵晔, 张靖溥 . RNA病毒内部核糖体进入位点(IRES)研究进展. 抗感染药物与耐药菌防控专题研讨会, 2011. | [31] | Macejak DG, Sarnow P . Internal initiation of translation mediated by the 5' leader of a cellular mRNA. Nature, 1991,353(6339):90-94. | [32] | Shi Y, Yang Y, Hoang B, Bardeleben C, Holmes B, Gera J, Lichtenstein A . Therapeutic potential of targeting IRES- dependent c-myc translation in multiple myeloma cells during ER stress. Oncogene, 2016,35(8):1015-1024. | [33] | Philippe C, Dubrac A, Quelen C, Desquesnes A, Van DBL, Segura C, Filleron T, Pyronnet S, Prats H, Brousset P , Touriol C. PERK mediates the IRES-dependent translational activation of mRNAs encoding angiogenic growth factors after ischemic stress. Sci Signal, 2016, 9(426): ra44. | [34] | Khan D, Katoch A, Das A, Sharathchandra A, Lal R, Roy P, Das S, Chattopadhyay S, Das S . Reversible induction of translational isoforms of p53 in glucose deprivation. Cell Death Differ, 2015,22(7):1203-1218. | [35] | Liberman N, Gandin V, Svitkin YV, David M, Virgili G, Jaramillo M, Holcik M, Nagar B, Kimchi A, Sonenberg N . DAP5 associates with eIF2β and eIF4AI to promote Internal Ribosome Entry Site driven translation. Nucleic Acids Res, 2015,43(7):3764-3775. | [36] | Vaklavas C, Grizzle WE, Choi H, Meng Z, Zinn K, Shrestha K, Blume S . IRES inhibition induces terminal differentiation and synchronized death in triple-negative breast cancer and glioblastoma cells. Tumour Biol, 2016,37(10):13247-13264. | [37] | Yamamoto H, Unbehaun A, Spahn CMT . Ribosomal chamber music: Toward an Understanding of IRES Mechanisms. Trends Biochem Sci, 2017,42(8):655-668. | [38] | Carvajal F, Vallejos M, Walters B, Contreras N, Hertz MI, Olivares E, Cáceres CJ, Pino K, Letelier A, Thompson SR, López-Lastra M . Structural domains within the HIV-1 mRNA and the ribosomal protein S25 influence cap-independent translation initiation. FEBS J, 2016,283(13):2508-2527. | [39] | Weingarten-Gabbay S, Elias-Kirma S, Nir R, Gritsenko A, Stern-Ginossar N, Yakhini Z, Weinberger A, Segal E. Systematic discovery of cap-independent translation sequences in human and viral genomes.Science , 2016, 351(6270): aad4939. | [40] | Le HTT, Sorrell AM, Siddle K . Two isoforms of the mRNA binding protein IGF2BP2 are generated by alternative translational initiation. PLoS One, 2012,7(3):e33140. | [41] | Weingarten-Gabbay S, Khan D, Liberman N, Yoffe Y, Bialik S, Das S, Oren M, Kimchi A . The translation initiation factor DAP5 promotes IRES-driven translation of p53 mRNA. Oncogene, 2014,33(5):611-618. | [42] | Baird SD, Turcotte M, Korneluk RG, Holcik M . Searching for IRES. RNA, 2006,12(10):1755-1785. | [43] | Le SY, Maizel JV Jr . A common RNA structural motif involved in the internal initiation of translation of cellular mRNAs. Nucleic Acids Res, 1997,25(2):362-369. | [44] | Komar AA, Hatzoglou M . Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states. Cell Cycle, 2011,10(2):229-240. | [45] | Komar AA, Hatzoglou M . Internal ribosome entry sites in cellular mRNAs: mystery of their existence. J Biol Chem, 2005,280(25):23425-23428. | [46] | Gao G, Dhar S, Bedford MT . PRMT5 regulates IRES- dependent translation via methylation of hnRNP A1. Nucleic Acids Res, 2017,45(8):4359-4369. | [47] | Lewis SM, Holcik M . For IRES trans-acting factors, it is all about location. Oncogene, 2008,27(8):1033-1035. | [48] | Terenin IM, Andreev DE, Dmitriev SE, Shatsky IN . A novel mechanism of eukaryotic translation initiation that is neither m7G-cap-, nor IRES-dependent. Nucleic Acids Res, 2013,41(3):1807-1816. | [49] | Sharma SD, Kraft JJ, Miller WA, Goss DJ . Recruitment of the 40S ribosome subunit to the 3°-untranslated region (UTR) of a viral mRNA, via the eIF4 complex, facilitates cap-independent translation. J Biol Chem, 2015,290(18):11268-11281. | [50] | Simon AE, Miller WA . 3° cap-independent translation enhancers of plant viruses. Annu Rev Microbiol, 2013,67:21-42. | [51] | Terenin IM, Andreev DE, Dmitriev SE, Shatsky IN . A novel mechanism of eukaryotic translation initiation that is neither m7G-cap-, nor IRES-dependent. Nucleic Acids Res, 2013,41(3):1807-1816. | [52] | Rakotondrafara AM, Polacek C, Harris E, Miller WA . Oscillating kissing stem-loop interactions mediate 5° scanning-dependent translation by a viral 3°-cap-independent translation element. RNA, 2006,12(10):1893-1906. | [53] | Simon AE . 3'UTRs of carmoviruses. Virus Res, 2015,206:27-36. | [54] | Blanco-Pérez M, Pérez-Cañamás M, Ruiz L, Hernández C . Efficient translation of pelargonium line pattern virus RNAs relies on a TED-like 3°-translational enhancer that communicates with the corresponding 5°-region through a long-distance RNA-RNA interaction. PLoS One, 2016,11(4):e0152593. | [55] | Nicholson BL, White KA . 3° Cap-independent translation enhancers of positive-strand RNA plant viruses. Curr Opin Virol, 2011,1(5):373-380. | [56] | Miller WA, Wang Z, Treder K . The amazing diversity of cap-independent translation elements in the 3°-untranslated regions of plant viral RNAs. Biochem Soc Trans, 2007,35(Pt 6):1629-1633. | [57] | Ogawa A, Tabuchi J , Doi Y. Identification of short untranslated regions that sufficiently enhance translation in high-quality wheat germ extract.Bioorg Med Chem Lett #, 2014, 24(16): 3724-3727. | [58] | Shatsky IN, Dmitriev SE, Terenin IM, Andreev DE . Cap- and IRES-independent scanning mechanism of translation initiation as an alternative to the concept of cellular IRESs. Mol Cells, 2010,30(4):285-293. | [59] | Andreev DE, Dmitriev SE, Zinovkin R, Terenin IM, Shatsky IN . The 5′ untranslated region of Apaf-1 mRNA directs translation under apoptosis conditions via a 5° end-dependent scanning mechanism. FEBS Lett, 2012,586(23):4139-4143. | [60] | Terenin IM, Smirnova VV, Andreev DE, Dmitriev SE, Shatsky IN . A researcher's guide to the galaxy of IRESs. Cell Mol Life Sci, 2017,74(8):1431-1455. | [61] | Thompson SR . So you want to know if your message has an IRES? Wiley Interdiscip Rev RNA, 2012,3(5):697-705. | [62] | Gilbert WV . Alternative ways to think about cellular internal ribosome entry. J Biol Chem, 2010,285(38):29033-29038. | [63] | Jackson RJ . The current status of vertebrate cellular mRNA IRESs. Cold Spring Harb Perspect Biol, 2013,5(2):a011569. | [64] | Elfakess R, Dikstein R . A translation initiation element specific to mRNAs with very short 5'UTR that also regulates transcription. PLoS One, 2008,3(8):e3094. | [65] | Elfakess R, Sinvani H, Haimov O, Svitkin Y, Sonenberg N, Dikstein R . Unique translation initiation of mRNAs-containing TISU element. Nucleic Acids Res, 2011,39(17):7598-7609. | [66] | Dikstein R . Transcription and translation in a package deal: the TISU paradigm. Gene, 2012,491(1):1-4. | [67] | Zhou J, Wan J, Shu XE, Mao Y, Liu XM, Yuan X, Zhang X, Hess ME, Brüning JC, Qian SB . N 6-methyladenosine guides mRNA alternative translation during integrated stress response . Mol Cell, 2018,69(4):636-647. | [68] | Meyer KD, Patil DP, Zhou J, Zinoviev A, Skabkin MA, Elemento O, Pestova TV, Qian SB, Jaffrey SR . 5'UTR m 6A promotes cap-independent translation . Cell, 2015,163(4):999-1010. |
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