遗传 ›› 2011, Vol. 33 ›› Issue (4): 353-357.doi: 10.3724/SP.J.1005.2011.00353

• 研究报告 • 上一篇    下一篇

不同群体中ATXN2基因编码区CAG重复的变异研究

陈晓晨, 孙浩, 米冬青, 黄小琴, 林克勤, 易文, 于亮, 史磊, 史荔, 杨昭庆, 褚嘉祐   

  1. 中国医学科学院北京协和医学院医学生物学研究所遗传室, 昆明650118
  • 收稿日期:2010-08-10 修回日期:2010-10-19 出版日期:2011-04-20 发布日期:2011-04-25
  • 通讯作者: 褚嘉祐 E-mail:chujy@imbcams.com.cn
  • 基金资助:

    国家自然科学基金项目(编号:30971578)和云南省自然科学基金项目(编号:2008ZC068M)资助

Variation of CAG repeats in coding region of ATXN2 gene in different ethnic groups

CHEN Xiao-Chen, SUN Hao, MI Dong-Qing, HUANG Xiao-Qin, LIN Ke-Qin, YI Wen, YU Liang, SHI Lei, SHI Li, YANG Zhao-Qing, CHU Jia-You   

  1. Department of Medical Genetics, Institute of Medical Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Kunming 650118, China
  • Received:2010-08-10 Revised:2010-10-19 Online:2011-04-20 Published:2011-04-25
  • Contact: CHU Jia-You E-mail:chujy@imbcams.com.cn

摘要: 在中国6个生活环境差异较大的少数民族群体中进行ATXN2基因编码区CAG重复的变异研究, 以衡量其是否受到正选择的作用以及寻找推动选择作用的因素。采集6个民族群体共291个健康无关个体, 对其进行STR分型, 直接计数其等位基因及等位基因型频率, 计算其线性Fst值, 构建针对该基因的系统进化树, 并对各群体进行MDS分析。线性Fst值结果显示: 回族和彝族群体间ATXN2基因STR位点进化的差异具有显著性, 其他4个群体相互间无显著性差异。结合已报道的其他群体进一步分析, 回族、哈尼族、云南蒙古族以及内蒙古自治区蒙古族每个人群都与日本人群有显著性差异; 回族、内蒙古自治区蒙古族与汉族具有显著性差异。6个群体中ATXN2基因STR的等位基因频率有各自的分布特点, 稀有等位基因频率变化产生的原因可能是选择作用的结果。

关键词: 自然选择, 民族群体, 基因多态性, ATXN2基因

Abstract: Toinvestigate CAG repeats variation of ATXN2 gene coding region in six ethnic groups that live in comparatively different environments, to evaluate whether these variations are under positive selection, and to find factors driving selection effects, 291 unrelated healthy individuals were collected from six ethnic groups and their STR geneotyping was performed. The frequencies of alleles and genotypes were counted and thereby Slatkin’s linearized Fst values were calculated. The UPGMA tree against this gene was constructed. The MDS analysis among these groups was carried out as well. The results from the linearized Fst values indicated that there were significant evolutionary differences of the STR in ATXN2 gene between Hui and Yi groups, but not among the other 4 groups. Further analysis was performed by combining our data with published data obtained from other groups. These results indicated that there were significant differences between Japanese and other groups including Hui, Hani, Yunnan Mongolian, and Inner Mongolian. Both Hui and Mongolian from Inner Mongolia were significantly different from Han. In conclusion, the six ethnic groups had their own distribution characterizations of allelic frequencies of ATXN2 STR, and the potential cause of frequency changes in rare alleles could be the consequence of positive selection.

Key words: ATXN2 gene, natural selection, ethnic groups, gene polymorphisms