遗传 ›› 2009, Vol. 31 ›› Issue (4): 365-373.doi: 10.3724/SP.J.1005.2009.00365

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转录因子结合位点生物信息学研究进展

侯琳1, 2;钱敏平1, 3;朱云平2;邓明华1, 3   

  1. 1. 北京大学数学科学学院, 北京 100871;
    2. 军事医学科学院放射与辐射医学研究所, 北京蛋白质组研究中心, 蛋白质组学国家重点实验室, 北京 100850;
    3. 北京大学理论生物学中心, 北京 100871

  • 收稿日期:2008-08-06 修回日期:2008-11-05 出版日期:2009-04-10 发布日期:2009-04-10
  • 通讯作者: 邓明华;朱云平

Advances on Bioinformatics Research in Transcription Factor Binding Sites

HOU Lin1, 2;QIAN Min-Ping1, 3;ZHU Yun-Ping2;DENG Ming-Hua1, 3   

  1. 1. School of Mathematical Sciences, Peking University, Beijing 100871, China;
    2. State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China;
    3. Center for Theoretical Biology, Peking University, Beijing 100871, China
  • Received:2008-08-06 Revised:2008-11-05 Online:2009-04-10 Published:2009-04-10
  • Contact: DENG Ming-Hua;ZHU Yun-Ping

摘要:

By using genome in situ hybridization (GISH) on root somatic chromosomes of allotetraploid derived from the cross Gossypium arboreum × G. bickii with genomic DNA (gDNA) of G. bickii as a probe, two sets of chromosomes, consisting of 26 chromosomes each, were easily distinguished from each other by their distinctive hybridization signals. GISH analysis directly proved that the hybrid G.arboreum×G. bickii is an allotetraploid amphiploid. The karyotype formula of the species was 2n = 4x = 52 = 46m (4sat) + 6sm (4sat). We identified four pairs of satellites with two pairs in each sub-genome. FISH analysis using 45S rDNA as a probe showed that the cross G. arboreum×G. bickii contained 14 NORs. At least five pairs of chromosomes in the G sub-genome showed double hybridization (red and blue) in their long arms, which indicates that chromatin introgression from the A sub-genome had occurred.

关键词: 系统发育足迹分析法
,
ChIP-chip, 位置权重矩阵, 生物信息学, 转录因子结合位点

Abstract: Zhaohe Yuan ;Yanlei Yin;Jianlu Qu;Liqin Zhu;Yun Li .Population Genetic Diversity in Chinese Pomegranate (Punica granatum L.) Cultivars Revealed by Fluorescent-AFLP Mark-ers.Journal of Genetics and Genomics ,2007,34(12): 1061-1071