基因及其顺式调控元件在动物表型进化中的作用

doi:10.3724/SP.J.1005.2014.0525

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HEREDITAS(Beijing) ›› 2014, Vol. 36 ›› Issue (6): 525-535.doi: 10.3724/SP.J.1005.2014.0525

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Role of genes and their cis-regulatory elements during animal morphological evolution

Boyuan Sun, Jianbo Tu, Ying Li, Mingyao Yang

Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu 611130, China

Received:2013-10-07 Revised:2013-12-06 Online:2014-06-20 Published:2014-05-28

Abstract

Abstract:

Cis-regulatory hypothesis is one of the most important theories in evolutionary developmental biology (evo-devo), which claims that evolution of cis-regulatory elements (CREs) plays a key role during evolution of morphology. However, an increasing number of experimental results show that cis-regulatory hypothesis alone is not far enough to explain the complexity of evo-devo processes. Other modifications, including mutations of protein coding, gene and genome duplications, and flexibility of homeodomains and CREs, also cause the morphological changes in animals. In this review, we retrospect the recent results of evolution of CREs and genes associated with CREs and discuss new methods and trends for research in evo-devo.

Key words: evo-devo, -regulatory element, gene, morphology

Boyuan Sun, Jianbo Tu, Ying Li, Mingyao Yang. Role of genes and their cis-regulatory elements during animal morphological evolution[J]. HEREDITAS(Beijing), 2014, 36(6): 525-535.

References

[1]Brakefield PM. Evo-devo and accounting for Darwin's endless forms. Phil Trans R Soc, 2011, 366(1574): 2069- 2075.
[2]Carroll SB. Endless forms most beautiful: the new science of evo devo and the making of the animal kingdom. New York: Norton & Company, 2005.
[3]Carroll SB. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell, 2008, 134(1): 25-36.
[4]Ioannidis S. Regulatory Evolution and theoretical argu-ments in evolutionary biology. Sci Educ, 2013, 22(2): 279- 292.
[5]Carroll SB. Endless forms: the evolution of gene regula-tion and morphological diversity//Philosophy of Biology: An Anthology. Wiley, John & Sons, 2009, 193.
[6]Wittkopp PJ, Kalay G. Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Nat Rev Genet, 2012, 13(1): 59-69.
[7]Yanez-Cuna JO, Kvon EZ, Stark A. Deciphering the transcriptional cis-regulatory code. Trends Genet, 2013, 29(1): 11-22.
[8]Simpson P, Ayyar S. Evolution of cis-regulatory sequences in Drosophila. Adv Genet, 2008, 61: 67-106.
[9]Bulger M, Groudine M. Enhancers: The abundance and function of regulatory sequences beyond promoters. Dev Biol, 2010, 339(2): 250-257.
[10]Brasier AR, Tate JE, Habener JF. Optimized use of the firefly luciferase assay as a reporter gene in mammalian cell lines. BioTechniques, 1989, 7(10): 1116-1122.
[11]Haeussler M, Joly JS. When needles look like hay: How to find tissue-specific enhancers in model organism genomes. Dev Biol, 2011, 350(2): 239-254.
[12]Sandelin A, Bailey P, Bruce S, Engström PG, Klos JM, Wasserman WW, Ericson J, Lenhard B. Arrays of ultra-conserved non-coding regions span the loci of key deve-lo-pmental genes in vertebrate genomes. BMC Genomics, 2004, 5(1): 99.
[13]Woolfe A, Goodson M, Goode DK, Snell P, Mcewen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJ, Cooke JE, Elgar G.. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol, 2004, 3(1): E7.
[14]Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Ultraconserved elements in the human genome. Science, 2004, 304(5675): 1321-1325.
[15]Elgar G. Pan-vertebrate conserved non-coding sequences associated with developmental regulation. Brief Func Genomic Proteomic, 2009, 8(4): 256-265.
[16]Vavouri T, Lehner B. Conserved noncoding elements and the evolution of animal body plans. Bioessays, 2009, 31(7): 727-735.
[17]Clarke SL, Vandermeer JE, Wenger AM, Schaar BT, Ahituv N, Bejerano G. Human developmental enhancers conserved between deuterostomes and protostomes. PLoS Genet, 2012, 8(8): E1002852.
[18]Pauls S, Smith SF, Elgar G. Lens development depends on a pair of highly conserved Sox21 regulatory elements. Dev Biol, 2012, 365(1): 310-318.
[19]Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJK, Cooke JE, Elgar G. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol, 2005, 3(1): E7.
[20]Rogers WA, Salomone JR, Tacy DJ, Camino EM, Davis KA, Rebeiz M, Williams TM. Recurrent modification of a conserved cis-regulatory element underlies fruit fly pig-menta-tion diversity. PLoS Genet, 2013, 9(8): E1003740.
[21]Punnamoottil B, Herrmann C, Pascual-Anaya J, D'aniello S, Garcia-Fernandez J, Akalin A, Becker TS, Rinkwitz S. Cis-regulatory charact

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Role of genes and their cis-regulatory elements during animal morphological evolution

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