虱目裂化线粒体基因组研究进展

doi:10.3724/SP.J.1005.2013.00847

遗传 ›› 2013, Vol. 35 ›› Issue (7): 847-855.doi: 10.3724/SP.J.1005.2013.00847

虱目裂化线粒体基因组研究进展

董文鸽^1,2, 郭宪国^1,2, 金道超¹, 薛士鹏³, 秦凤², Simon Song⁵, Stephen C. Barker⁴, Renfu Shao⁵

1. 贵州大学昆虫研究所, 贵州省山地农业病虫害重点实验室, 贵阳 550025 2. 大理学院病原与媒介生物研究所, 大理 671000 3. 南阳医学高等专科学校, 南阳 473061 4. 昆士兰大学生物与化学学院寄生虫学研究室, 昆士兰, 澳大利亚 5. 阳光海岸大学科学教育工程学院种群生态学研究中心, 昆士兰, 澳大利亚

收稿日期:2013-01-03 修回日期:2013-02-07 出版日期:2013-07-20 发布日期:2013-07-25
通讯作者: 金道超 E-mail:dcjin@gzu.edu.cn
基金资助:
国家自然科学基金项目(编号：81260259), 贵州省科技创新人才队伍建设专项 (编号：[2009]4003)和国际合作项目：动物裂化线粒体基因组的进化和功能研究(编号：DP120100240)资助

Understanding mitochondrial genome fragmentation in parasitic lice (Insecta: Phthiraptera)

DONG Wen-Ge^{1, 2}, GUO Xian-Guo^{1, 2}, JIN Dao-Chao¹, XUE Shi-Peng³, QIN Feng², Simon Song⁵, Stephen C.Barker⁴, Renfu Shao⁵

1. The Provincial Key Laboratory for Agricultural Pest Management of Mountainous Region, Institute of Entomology, Guizhou University, Guiyang 550025, China 2. Institute of Pathogens and Vectors, Dali University, Dali 671000, China 3. Nanyang Medical College, Nanyang 473061, China 4. Parasitology Section, School of Chemistry and Molecular Biosciences, University of Queensland, Queensland, Australia 5. Genecology Research Centre, Faculty of Science, Education and Engineering, University of the Sunshine Coast, Maroochydore, Queen-sland, Australia

Received:2013-01-03 Revised:2013-02-07 Online:2013-07-20 Published:2013-07-25

摘要/Abstract

摘要： 虱目是哺乳类和鸟类体表的专性寄生虫。在虱科、阴虱科、长角鸟虱科和兽羽虱科的某些寄生虱种中发现了线粒体基因组裂化现象, 其线粒体基因组裂化成了多个环状的线粒体染色体, 如体虱(Pediculus humanus)、头虱(pediculus capitis)和阴虱(Pthirus pubis)的线粒体基因组分别裂化形成20个、20个和14个微环染色体。微环染色体可能是基因删除和同源重组的结果, 关于线粒体基因组裂化的具体原因和机制, 目前并不清楚, 推测可能是进化选择或随机遗传漂变的结果或与线粒体单链DNA结合蛋白的缺失有关。鉴于线粒体基因组裂化研究对于深入理解线粒体的起源和进化方面具有重要意义, 文章以虱目裂化线粒体基因组为主线, 列举了动物裂化线粒体基因组和裂化特征, 阐述了虱目裂化线粒体基因组的研究现状, 分析了虱目线粒体基因组裂化的类型、原因和机制, 并对该领域未来的研究方向进行了展望。

关键词: 基因组裂化, 虱目, 线粒体基因组, 染色体进化

Abstract: Lice are obligate ectoparasites of mammals and birds. Extensive fragmentation of mitochondrial genomes has been found in some louse species in the families Pediculidae, Pthiridae, Philopteridae and Trichodectidae. For example, the mt genomes of human body louse (Pediculus humanus), head louse (Pediculus capitis), and public louse (Pthirus pubis) have 20, 20 and 14 mini-chromosomes, respectively. These mini-chromosomes might be the results of deletion and recombination of mt genes. The factors and mechanisms of mitochondrial genome fragmentation are currently unknown. The fragmentation might be the results of evolutionary selection or random genetic drift or it is probably related to the lack of mtSSB (mitochondrial single-strand DNA binding protein). Understanding the fragmentation of mitochondrial genomes is of significance for understanding the origin and evolution of mitochondria. This paper reviews the recent advances in the studies of mito-chondrial genome fragmentation in lice, including the phenomena of mitochondrial genome fragmentation, characteristics of fragmented mitochondrial genomes, and some factors and mechanisms possibly leading to the mitochondrial genome fragmentation of lice. Perspectives for future studies on fragmented mt genomes are also discussed.

Key words: Phthiraptera, mitochondrial genome, chromosome evolution, genome fragmentation

董文鸽郭宪国金道超薛士鹏秦凤 Simon Song, Stephen C. Barker, Renfu Shao. 虱目裂化线粒体基因组研究进展[J]. 遗传, 2013, 35(7): 847-855.

DONG Wen-Ge GUO Xian-Guo JIN Dao-Chao XUE Shi-Peng QIN Feng Simon Song Stephen C.Barker Renfu Shao. Understanding mitochondrial genome fragmentation in parasitic lice (Insecta: Phthiraptera)[J]. HEREDITAS, 2013, 35(7): 847-855.

参考文献

[1] Barker SC. Phylogeny and classification, origins, and evolution of host associations of lice. Int J Parasitol, 1994, 24(8): 1285-1291.
[2] Price RD, Hellenthal RA, Palma RL, Johnson KP, Clayton DH. The chewing lice: world checklist and biological overview. Illinois: Illinois Natural History Survey Special Publication, 2003: 1-501.
[3] Kim KC, Ludwig HW. Te family classification of the Anoplura. Syst Entomol, 1978, 3(3): 249-284.
[4] Kim KC, Ludwig HW. Parallel evolution, cladistics, and classification of parasitic Psocodea. Ann Entomol Soc Am, 1982, 75(5): 537-548.
[5] Korhonen JA, Pham XH, Pellegrini M, Falkenberg M. Reconstitution of a minimal mtDNA replisome in vitro. EMBO J, 2004, 23(12): 2423-2429.
[6] Shao R, Kirkness EF, Barker SC. The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus. Genome Res, 2009, 19(5): 904-912.
[7] Kirkness EF, Haas BJ, Sun WL, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, Pittendrigh BR. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proc Natl Acad Sci USA, 2010, 107(27): 12168-12173.
[8] Shao RF, Barker SC. Chimeric mitochondrial minichro-mosomes of the human body louse, Pediculus humanus: evidence for homologous and non-homologous recombination. Gene, 2011, 473(1): 36-43.
[9] Shao RF, Zhu XQ, Barker SC, Herd K. Evolution of ex-tensively fragmented mitochondrial genomes in the lice of humans. Genome Biol Evol, 2012, 4(11): 1088-1101.
[10] Watanabe KI, Bessho Y, Kawasaki M, Hori H. Mitochon-drial genes are found on minicircle DNA molecules in the mesozoan animal Dicyema. J Mol Biol, 1999, 286(3): 645-650.
[11] Armstrong MR, Blok VC, Phillips MS. A multipartite mitochondrial genome in the potato cyst nematode Globod-era pallida. Genetics, 2000, 154(1): 181-192.
[12] Gibson T, Blok VC, Dowton M. Sequence and characteri-zation of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved among close nematode relatives. J Mol Evol, 2007, 65(3): 308-315.
[13] Suga K, Welch DBM, Tanaka Y, Sakakura Y, Hagiwarak A. Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis. Mol Biol Evol, 2008, 25(6): 1129-1137.
[14] Cameron SL, Yoshizawa K, Mizukoshi A, Whiting MF, Johnson KP. Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera). BMC Genomics, 2011, 12: 394.
[15] Wei DD, Shao RF, Yuan ML, Dou W, Barker SC, Wang JJ. The multipartite mitochondrial genome of Liposcelis bo-strychophila: insights into the evolution of mitochondrial genomes in bilateral animals. PloS One, 2012, 7(3): e33973.
[16] Smith DR, Kayal E, Yanagihara AA, Collins AG, Pirro S, Keeling PJ. First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented, linear architecture and insights into telomere evolution. Genome Biol Evol, 2011, 4(1): 52-58.
[17] Marande W, Lukes J, Burger G. Unique mitochondrial genome structure in diplonemids, the sister group of kineto-plastids. Eukaryot Cell, 2005, 4(6): 1137-1146.
[18] Marande W, Burger G. Mitochondrial DNA as a genomic jigsaw puzzle. Science, 2007, 318(5849): 415.
[19] Sugiyama Y, Watase Y, Nagase M, Makita N, Yagura S, Hirai A, Sugiura M. The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants. Mol Genet Genomics, 2005, 272(6): 603-615.
[20] Burger G, Lang BF. Parallels in genome evolution in mitochondria and bacterial symbionts. IUBMB Life, 2003, 55(4-5): 205-212.
[21] Voigt O, Erpenbeck D, Wörheide G. A fragmented meta-zoan organellar genome: The two mitochondrial chromosomes of Hydra magnipapillata. BMC Genomics, 2008, 9: 350.
[22] Fan JS, Lee RW. Mitochondrial genome of the colorless green alga Polytomella parva: two linear DNA molecules with homologous inverted repeat termini. Mol Biol Evol, 2002, 19(7): 999-1007.
[23] Nosek J, Tomáška L, Fukuhara H, Suyama Y, Ková? L. Linear mitochondrial genomes: 30 years down the line. Trends Genet, 14(5): 184-188.
[24] Burger G, Gray MW, Lang BF. Mitochondrial genomes: anything goes. Trends Genet, 2003, 19(12): 709-716.
[25] 魏丹丹. 书虱种群遗传多样性及线粒体基因组进化研究. 博士毕业论文, 2012, 重庆：西南大学
[26] Cameron SL, Johnson KP, Whiting MF. The mitochondrial genome of the screamer louse Bothriometopus (Phthirap-tera: Ischnocera): Effects of extensive gene rearrangements on the evolution of the genome. J Mol Evol, 2007, 65(5): 589-604.
[27] Covacin C, Shao R, Cameron S, Barker SC. Extraordinary number of gene rearrangements in the mitochondrial genomes of lice (Phthiraptera: Insecta). Insect Mol Biol, 2006, 15(1): 63-68.
[28] Sinclair AN, Butler RW, Picton J. Feeding of the chewing louse Damalinia ovis (Schrank) (Phthiraptera: Trichodec-tidae) on sheep. Vet Parasitol, 1989, 30(3): 233-251.
[29] Johnson KP, Clayton DH. The biology, ecology, and evo-lution of chewing lice. In: Price RP, Hellenthal RA, Palma RL, eds. The chewing lice: World Checklist and Biological Overview. Champaign: Illinois Natural History Survey Special Publication, 2003: 449-476.
[30] Shao RF, Campbell NJH, Barker SC. Numerous gene re-arrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera). Mol Biol Evol, 2001, 18(5): 858-865.
[31] Beard CB, Hamm DM, Collins FH. The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects. Insect Mol Biol, 1993, 2(2): 103-124.
[32] Dotson EM, Beard CB. Sequence and organization of the mitochondrial genome of the Chagas disease vector, Tria-toma dimidiata. Insect Mol Biol, 2001, 10(3): 205-215.
[33] Black WC, Roehrdanz RL. Mitochondrial gene order is not conserved in arthropods: prostriate and metastraite tick mitochondrial genomes. Mol Biol Evol, 1998, 15(12): 1772-1785.
[34] Rand MR. “Why genomes in pieces?” revisited: Sucking lice do their own thing in mtDNA circle game. Genome Res, 2009, 19(5): 700-702.
[35] Landweber LF. Why genomes in pieces? Science, 2007, 318(5849): 405-407.
[36] Lang BF, Gray MW, Burger G. Mitochondrial genome evolution and the origin of eukaryotes. Annu Rev Genet, 1999, 33: 351-397.
[37] Pestryakov PE, Lavrik OI. Mechanisms of single-stranded DNA-binding protein functioning in cellular DNA me-tabolism. Biochemistry (Moscow), 2008, 73(13): 1388-1404.
[38] Johnson KP, Mockford EL. Molecular systematics of pso-comorpha (Psocoptera). Syst Entomol, 2003, 28(3): 409-416.
[39] Yoshizawa K, Johnson KP. Phylogenetic position of Phthiraptera (Insecta: Paraneoptera) and elevated rate of evolution in mitochondrial 12S and 16S rDNA. Mol Phy-logenet Evol, 2003, 29(1): 102-114.
[40] Mikac KM, FitzSimmons NN. Genetic structure and dis-persal patterns of the invasive psocid Liposcelis decolor (Pearman) in Australian grain storage systems. Bull En-tomol Res, 2010, 100(5): 521-527.
[41] Lavrov DV. Key transitions in animal evolution: a mito-chondrial DNA perspective. Integr Comp Biol, 2007, 47(5): 734-743.
[42] Yuan ML, Wei DD, Wang BJ, Dou W, Wang JJ. The complete mitochondrial genome of the citrus red mite Panonychus citri (Acari: Tetra-nychidae): high genome rear-rangement and extremely truncated tRNAs. BMC Genom-ics, 2010, 11: 597.
[43] Helfenbein KG, Fourcade HM, Vanjani RG, Boore JL. The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. Proc Natl Acad Sci USA, 2004, 101(29): 10639-10643.
[44] Domes K, Maraun M, Scheu S, Cameron SL. The complete mitochondrial genome of the sexual oribatid mite Steganacarus magnus: genome rearrangements and loss of tRNAs. BMC Genomics, 2008, 9: 532.
[45] Melov S, Lithgow GJ, Fischer DR, Tedesco PM, Johnson TE. Increased frequency of deletions in the mitochondrial genome with age of Caenorhabditis elegans. Nucleic Acids Res, 1995, 23(8): 1419-1425.
[46] Fauron C, Casper M, Gao Y, Moore B. The maize mito-chondrial genome: dynamic, yet functional. Trends Genet, 1995, 11(6): 228-235.
[47] Dowton M, Austin AD. Evolutionary dynamics of a mito-chondrial rearrangement "Hot Spot" in the Hymenoptera. Mol Biol Evol, 1999, 16(2): 198-309.
[48] Muller R, Boore J. Molecular mechanisms of extensive mitochondrial gene rearrangement in Plethodontid sala-manders. Mol Biol Evol, 2005, 22(10): 2104-2112.
[49] Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M. The Mitochondrial Subgenomes of the Nematode Globodera pallida Are Mosaics: Evidence of Recombination in an Animal Mitochondrial Genome. recombination in an animal mitochondrial genome. Journal of Molecular Evolution, 2007, 64: 463-471.
[50] Boore, JL. Animal mitochondrial genomes. Nucleic Acids Research, 1999. 27(8): 1767-1780.

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虱目裂化线粒体基因组研究进展

Understanding mitochondrial genome fragmentation in parasitic lice (Insecta: Phthiraptera)

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