遗传 ›› 2020, Vol. 42 ›› Issue (4): 374-379.doi: 10.16288/j.yczz.19-271

• 研究报告 • 上一篇    下一篇

中国人群中抗结核药物引发肝损伤的易感基因标记研究

周晨希, 李沫, 怀聪, 贺林, 秦胜营()   

  1. 上海交通大学Bio-X研究院,上海 200030
  • 收稿日期:2019-11-24 修回日期:2019-12-26 出版日期:2020-04-20 发布日期:2020-02-26
  • 通讯作者: 秦胜营 E-mail:chinsir@sjtu.edu.cn
  • 作者简介:周晨希,硕士,专业方向:生物学。E-mail: chenxizhou@sjtu.edu.cn
  • 基金资助:
    国家自然科学基金项目编号(81773818);国家自然科学基金项目编号(81273596);国家自然科学基金项目编号(30900799);国家自然科学基金项目编号(81671326);上海市浦江人才计划项目资助编号(17PJD020)

Study on hereditary susceptibility genetic markers to anti-tuberculosis drug induced liver injury in Chinese population

Zhou Chenxi, Li Mo, Huai Cong, He Lin, Qin Shengying()   

  1. Bio-X Institute, Shanghai Jiaotong University, Shanghai 200030, China
  • Received:2019-11-24 Revised:2019-12-26 Online:2020-04-20 Published:2020-02-26
  • Contact: Qin Shengying E-mail:chinsir@sjtu.edu.cn
  • Supported by:
    Supported by the National Natural Science Foundation of China Nos(81773818);Supported by the National Natural Science Foundation of China Nos(81273596);Supported by the National Natural Science Foundation of China Nos(30900799);Supported by the National Natural Science Foundation of China Nos(81671326);Shanghai Pujiang Program No(17PJD020)

摘要:

为系统性研究中国人群中抗结核药物引发肝损伤的易感基因标记,本研究以41例抗结核药物引发肝损伤的病人和39例健康对照为研究对象,采用Haloplex捕获测序的方法对其基因组中药物代谢、转运和免疫相关通路的109个基因进行靶向测序。用Plink软件对DNA突变位点与肝损伤的发生进行关联分析,以千人基因组计划东亚人群作为对照组,对显著性位点进行验证,并用SIFT和Polyphen2软件对预测显著关联的位点进行功能预测。结果发现UGT1A4 rs2011404 (χ 2 = 4.6809, P =0.0305)是抗结核药物引发的肝损伤的易感基因标记,且rs2011404突变可能引起UGT1A4蛋白的功能障碍。本研究为临床上对抗结核药物的合理用药提供了有益的参考。

关键词: 抗结核药物, 肝损伤, 关联分析, UGT1A4

Abstract:

To systematically study the susceptible genetic markers for liver injury induced by anti-tuberculosis drugs in the Chinese population, 109 genes related to drug metabolism, transport and immunity were captured by Haloplex capture technique from DNA samples of 41 patients with liver injury induced by anti-tuberculosis drugs and 39 healthy controls, and sequenced completely. Association study was conducted using Plink software. To verify the significant candidate SNPs, the χ 2 study was expanded to the control group from the 1000-person Genome Project of the East Asian population. SIFT and Polyphen2 software were used to predict the functional significance of the associated SNPs. Our results identified the UGT1A4 rs2011404 (χ 2 = 4.6809, P = 0.0305) as a susceptible genetic marker for liver injury induced by anti-tuberculosis drugs, and rs2011404 mutation might contribute to UGT1A4 protein dysfunction. This study has provided a potentially useful reference for establishing the precision medicine in rational uses of anti-tuberculosis drugs in the clinic.

Key words: anti-tuberculosis drug, liver injury, association study, UGT1A4