[1] | Heffner EL, Sorrells ME, Jannink JL. Genomic selection for crop improvement. Crop Sci, 2009, 49(1): 1-12. | [2] | Meuwissen TH, Hayes BJ, Goddard ME. Prediction of total genetic value using genome-wide dense marker maps. Genetics, 2001, 157(4): 1819-1829. | [3] | Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet, 1980, 32(3): 314-331. | [4] | Wang JL. Study on the methods of genomic selection for meat sheep by simulation[D]. Jinzhong: Shanxi Agricultural University, 2014. | [4] | 王景霖. 肉用绵羊基因组选择方法的模拟研究[学位论文]. 晋中: 山西农业大学, 2014. | [5] | Henderson CR. Best linear unbiased estimation and prediction under a selection model. Biometrics, 1975, 31(2): 423-447. | [6] | VanRaden PM. Efficient Methods to compute genomic predictions. J Dairy Sci, 2008, 91(11): 4414-4423. | [7] | Zhu M. Application of genomic selection on carcass and meat quality traits in simmental cattle[D]. Beijing: Chinese Academy of Agricultural Sciences, 2013. | [7] | 朱淼. 西门塔尔牛部分屠宰和肉质性状基因组选择初步研究[学位论文]. 北京: 中国农业科学院, 2013. | [8] | Misztal I, Legarra A, Aguilar I. Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information. J Dairy Sci, 2009, 92(9): 4648-4655. | [9] | Christensen OF, Lund MS. Genomic prediction when some animals are not genotyped. Genet Sel Evol, 2010, 42: 2. | [10] | Whittaker JC, Thompson R, Denham MC. Marker-assisted selection using ridge regression. Genet Res, 2000, 75(2): 249-252. | [11] | Gianola D, de los Campos G, Hill WG, Manfredi E, Fernando R. Additive genetic variability and the Bayesian alphabet. Genetics, 2009, 183(1): 347-363. | [12] | Goddard ME, Hayes BJ. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet, 2009, 10(6): 381-391. | [13] | Hayes BJ, Visscher PM, Goddard ME. Increased accuracy of artificial selection by using the realized relationship matrix. Genet Res, 2009, 91(1): 47-60. | [14] | Habier D, Fernando RL, Kizilkaya K, Garrick DJ. Extension of the bayesian alphabet for genomic selection. BMC Bioinformatics, 2011, 12: 186. | [15] | VanRaden PM, Van Tassell CP, Wiggans GR, Sonstegard TS, Schnabel RD, Taylor JF, Schenkel FS. Invited Review: reliability of genomic predictions for North American Holstein bulls. J Dairy Sci, 2009, 92(1): 16-24. | [16] | Calus MPL, Meuwissen THE, de Roos APW, Veerkamp RF. Accuracy of genomic selection using different methods to define haplotypes. Genetics, 2008, 178(1): 553-561. | [17] | Calus MPL, Meuwissen THE, Windig JJ, Knol EF, Schrooten C, Vereijken ALJ, Veerkamp RF. Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding values. Genet Sel Evol, 2009, 41: 11. | [18] | Rolf MM, Taylor JF, Schnabel RD, Mckay SD, Mcclure MC, Northcutt SL, Kerley MS, Weaber RL. Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. BMC Genet, 2010, 11: 24. | [19] | Wu XP. GWAS and genomic prediction based on markers of SNP-Chips and sequence data in dairy cattle populations[D]. Beijing: China Agricultural University, 2014. | [19] | 吴晓平. 基于SNP芯片和全测序数据的奶牛全基因组关联分析和基因组选择研究[学位论文]. 北京: 中国农业大学, 2014. | [20] | Gao H, Su G, Janss L, Zhang Y, Lund MS. Model comparison on genomic predictions using high-density markers for different groups of bulls in the Nordic Holstein population. J Dairy Sci, 2013, 96(7): 4678-4687. | [21] | Su G, Br?ndum RF, Ma P, Guldbrandtsen B, Aamand GP, Lund MS. Comparison of genomic predictions using medium-density (~54, 000) and high-density (~777, 000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations. J Dairy Sci, 2012, 95(8): 4657-4665. | [22] | Jonas E, de Koning DJ. Genomic selection needs to be carefully assessed to meet specific requirements in livestock breeding programs. Front Genet, 2015, 6: 49. | [23] | Sonesson AK, Meuwissen THE. Testing strategies for genomic selection in aquaculture breeding programs. Genet Sel Evol, 2009, 41: 37. | [24] | Sun W, Ibrahim JG, Zou F. Genomewide Multiple-Loci Mapping in experimental crosses by iterative adaptive penalized regression. Genetics, 2010, 185(1): 349-359. | [25] | Habier D, Fernando RL, Dekkers JC. The impact of genetic relationship information on genome-assisted breeding values. Genetics, 2007, 177(4): 2389-2397. | [26] | Dong LS. Genomic selection by pre-selection of markers[D]. Tai’an: Shandong Agricultural University, 2012. | [26] | 董林松. 通过预选标记法进行基因组选择[学位论文]. 泰安: 山东农业大学, 2012. | [27] | Hayes BJ, Bowman PJ, Chamberlain AC, Verbyla K, Goddard ME. Accuracy of genomic breeding values in multi-breed dairy cattle populations. Genet Sel Evol, 2009, 41: 51. | [28] | Lorenz AJ, Smith KP, Jannink JL. Potential and optimization of genomic selection for fusarium head blight resistance in six-row barley. Crop Sci, 2012, 52(4): 1609-1621. | [29] | Peippo J, Viitala S, Virta J, R?ty M, Tammiranta N, Lamminen T, Aro J, Myllym?ki H, Vilkki J. Birth of correctly genotyped calves after multiplex marker detection from bovine embryo microblade biopsies. Mol Reprod Dev, 2007, 74(11): 1373-1378. | [30] | Nielsen HM, Sonesson AK, Meuwissen THE. Optimum contribution selection using traditional best linear unbiased prediction and genomic breeding values in aquaculture breeding schemes. J Anim Sci, 2011, 89(3): 630-638. | [31] | Schaeffer LR. Strategy for applying genome-wide selection in dairy cattle. J Anim Breed Genet, 2006, 123(4): 218-223. | [32] | Hayes BJ, Bowman PJ, Chamberlain AJ, Goddard ME. Invited review: genomic selection in dairy cattle: progress and challenges. J Dairy Sci, 2009, 92(2): 433-443. | [33] | Lillehammer M, Meuwissen THE, Sonesson AK. A comparison of dairy cattle breeding designs that use genomic selection. J Dairy Sci, 2011, 94(1): 493-500. | [34] | Pryce JE, Goddard ME, Raadsma HW, Hayes BJ. Deterministic models of breeding scheme designs that incorporate genomic selection. J Dairy Sci, 2010, 93(11): 5455-5466. | [35] | Lillehammer M, Meuwissen THE, Sonesson AK. Genomic selection for maternal traits in pigs. J Anim Sci, 2011, 89(12): 3908-3916. | [36] | Avenda?o S, Watson KA, Kranis A. Genomics in poultry breeding-from utopias to deliverables. In: Proceedings of the 9th World Congress on Genetics Applied to Livestock Production. Leipzig, Germany, 2010. | [37] | Guo G, Zhao FP, Wang YC, Zhang Y, Du LX, Su GS. Comparison of single-trait and multiple-trait genomic prediction models. BMC Genet, 2014, 15: 30. | [38] | Calus MPL, Veerkamp RF. Accuracy of multi-trait genomic selection using different methods. Genet Sel Evol, 2011, 43: 26. | [39] | MacLeod IM, Hayes BJ, Goddard ME, Villalobos NL. Will sequence SNP data improve the accuracy of genomic prediction in the presence of long term selection. In: Proceedings of the Twentieth Conference of the Association for the Advancement of Animal Breeding and Genetics. Napier, New Zealand, 2013: 215-219. | [40] | Clark SA, Hickey JM, van der Werf JHJ. Different models of genetic variation and their effect on genomic evaluation. Genet Sel Evol, 2011, 43: 18. | [41] | Ueki M, Tamiya G. Smooth-Threshold Multivariate Genetic prediction with unbiased model selection. Genet Epidemiol, 2016, 40(3): 233-243. | [42] | Toro MA, Varona L. A note on mate allocation for dominance handling in genomic selection. Genet Sel Evol, 2010, 42: 33. | [43] | Menke DB. Engineering subtle targeted mutations into the mouse genome. Genesis, 2013, 51(9): 605-618. | [44] | Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CBA, Woolliams JA, Hickey JM. Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genet Sel Evol, 2015, 47: 55. |
|