遗传 ›› 2020, Vol. 42 ›› Issue (8): 752-759.doi: 10.16288/j.yczz.19-272
收稿日期:
2020-04-26
修回日期:
2020-07-10
出版日期:
2020-08-20
发布日期:
2020-07-29
通讯作者:
季秀玲
E-mail:jixiuling1023@126.com
作者简介:
徐志伟,在读硕士研究生,专业方向:低温微生物。E-mail: 基金资助:
Zhiwei Xu, Yunlin Wei, Xiuling Ji()
Received:
2020-04-26
Revised:
2020-07-10
Online:
2020-08-20
Published:
2020-07-29
Contact:
Ji Xiuling
E-mail:jixiuling1023@126.com
Supported by:
摘要:
假单胞菌属(Pseudomonas spp.)是地球上重要的生态菌群之一,广泛分布于淡水、土壤等生态环境。假单胞菌噬菌体是以假单胞菌为宿主的病毒,不仅影响宿主的生存状况和进化过程,而且在生物物质循环和能量流动中扮演着重要角色。随着基因组测序技术的飞速发展,许多假单胞菌噬菌体的全基因组测序工作已经完成。截至2020年7月,GenBank收录的假单胞菌噬菌体基因组数有247条,占全部病毒基因组(10,069条)的2.45%。由于假单胞菌噬菌体基因组大小差异较大、遗传含量不同、基因组之间相似性较低,因此对假单胞菌噬菌体基因组的研究相对较少。本文主要对假单胞菌噬菌体基因组的特点、遗传多样性和功能基因方面的研究进行了综述,以期为理解细菌和噬菌体的对抗性共进化作用以及噬菌体的遗传进化提供参考。
徐志伟, 魏云林, 季秀玲. 假单胞菌噬菌体基因组学研究进展[J]. 遗传, 2020, 42(8): 752-759.
Zhiwei Xu, Yunlin Wei, Xiuling Ji. Progress on phage genomics of Pseudomonas spp.[J]. Hereditas(Beijing), 2020, 42(8): 752-759.
图1
铜绿假单胞菌与噬菌体D3112的遗传图谱 A:铜绿假单胞菌遗传图;B:噬菌体D3112遗传图。遗传图谱上方是G+C含量的图形表示,与基因图谱按比例绘制。中间部分显示了D3112预测的ORF及其方向,由实心箭头表示。每个箭头下方的数字对应于ORF编号,每个箭头上方的名称标识具有高度相似性的已知蛋白质。黑色箭头A、B、c表示3个先前测序的基因,白色箭头表示与已知蛋白质相似的ORF,灰色箭头表示未知的ORF。左侧方框表示与噬菌体D3112宿主高度相似的细菌,阴影表示不同程度的相似性。NmZ:脑膜炎奈瑟球菌Z2491;NmM:脑膜炎奈瑟球菌MC58;So:S. oneidensis;Hi:流感嗜血杆菌;SeTy:肠炎沙门氏菌;StLT2:肠炎链球菌LT2;EcO:大肠杆菌O157:H7;Ec:大肠杆菌;Sf:弗氏志贺菌;Mu:肠噬菌体Mu;PA:铜绿假单胞菌;Pss:丁香属;Pf:荧光假单胞菌;Pp:恶臭假单胞菌;Xf:X. fastidiosa。框内的星号表示基于期望值与D3112 ORF具有最高相似性的物种,菱形显示通过贝叶斯方法与D3112 ORF最密切相关的物种,而三角形显示通过邻点连接法与D3112 ORF最密切相关的物种。"
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