[1] 张俊杰, 郭连成, 崔志强, 隋丽英. 盐藻工厂化养殖技术与产品开发(一). 盐业与化工, 2009, 38(6): 35-38. [2] Zhang N, Wang F, Meng X, Luo S, Li Q, Dong H, Xu Z, Song R. Molecular cloning and characterization of a trehalose-6-phosphate synthase/phosphatase from Dunaliella viridis . Mol Bio Rep , 2011, 38(4): 2241-2248. [3] 陈琴, 张福, 姜润林. 3种营养物质对极端嗜盐绿色杜氏藻生长的影响. 苏盐科技, 2006, (4): 21-23. [4] 蔡马, 姜建国, 余土元. NaCl浓度对杜氏盐藻中1种NAD + 依赖的3-磷酸甘油脱氢酶基因表达的影响. 华中农业大学学报, 2013, 32(5): 77-83. [5] 吕文兵, 刘红涛, 薛乐勋. 不同盐浓度和光照强度对杜氏盐藻psbA基因表达的影响. 华中师范大学学报(自然科学版), 2010, 44(2): 288-292. [6] Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet , 2009, 10(1): 57-63. [7] Costa V, Angelini C, De Feis I, Ciccodicola A. Uncovering the complexity of transcriptomes with RNA-Seq. J Biomed Biotechnol , 2010, 2010: Article ID 853916. [8] Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet , 2011, 12(2): 87-98. [9] Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-Seq data by SpliceMap. Nucl Acids Res , 2010, 38(14): 4570-4578. [10] 祁云霞, 刘永斌, 荣威恒. 转录组研究新技术: RNA-Seq及其应用. 遗传, 2011, 33(11): 1191-1202. [11] Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA , 1977, 74(12): 5463-5467. [12] Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Weiner MP, Yu PG, Begley RF, Rothberg JM. Genome sequencing in microfabricated high-density picolitre reactors. Nature , 2005, 437(7057): 376-380. [13] Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature , 2008, 453(7199): 1239- 1243. [14] Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods , 2008, 5(7): 613-619. [15] Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science , 2008, 320(5881): 1344-1349. [16] 梁烨, 陈双燕, 刘公社. 新一代测序技术在植物转录组研究中的应用. 遗传, 2011, 33(12): 1317-1326. [17] 刘万飞, 王西亮, 赵宇慧, 曾瀞瑶, 耿佳宁, 胡松年. 基于第二代测序技术的细菌基因组与转录组研究策略简介. 微生物学通报, 2011, 38(11): 1705-1714. [18] 金迪, 王加启, 赵圣国, 卜登攀, 孙鹏, 周凌云. 元转录组学在微生物群落研究中的应用. 微生物学通报, 2012, 39(2): 237-245. [19] 章丽, 龚一富, 刘晓丹, 张文青. 盐生杜氏藻β-胡萝卜素羟化酶基因( chyb )的克隆及表达分析. 农业生物技术学报, 2013, 21(8): 920-930. [20] 许芳, 石科, 李靓, 张楠楠, 薛乐勋. 杜氏盐藻FKBP cDNA的克隆及其在鞭毛解组装中的功能. 郑州大学学报(医学版), 2011, 46(6): 825-828. [21] Li Q, Gao XS, Sun Y, Zhang QQ, Song RT, Xu ZK. Isolation and characterization of a sodium-dependent phosphate transporter gene in Dunaliella viridis . Biochem Biophys Res Commun , 2006, 340(1): 95-104. [22] Rismani-Yazdi H, Haznedaroglu BZ, Bibby K, Peccia J. Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta : pathway description and gene discovery for production of next-generation biofuels. BMC Genomics , 2011, 12: 148. [23] Yang SH, Guarnieri MT, Smolinski S, Ghirardi M, Pienkos PT. De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq. Biotechnol Biofuels , 2013, 6(1): 118. [24] 王冬梅, 王玮蔚, 孙雪, 徐年军. 一株杜氏藻的分子鉴定与耐盐特性. 植物生理学报, 2014, 50(3): 315-323. [25] Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng QD, Chen ZH, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol , 2011, 29(7): 644-652. [26] Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol , 2009, 10(3): R25. [27] Tatusov RL, Koonin EV, Lipman DJ. A genomic perspective on protein families. Science , 1997, 278(5338): 631-637. [28] Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov S, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics , 2003, 4: 41. [29] Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M. From genomics to chemical genomics: new developments in KEGG. Nucl Acids Res , 2006, 34(Suppl.1): D354-D357. [30] Zdobnov EM, Apweiler R. InterProScan-an integration platform for the signature recognition methods in InterPro. Bioinformatics , 2001, 17(9): 847-848. [31] Ye J, Fang L, Zheng HK, Zhang Y, Chen J, Zhang ZJ, Wang J, Li ST, Li RQ, Bolund L, Wang J. WEGO: a web tool for plotting GO annotations. Nucl Acids Res , 2006, 34(Suppl. 2): W293-W297. [32] Sadka A, Lers A, Zamir A, Avron M. A critical examination of the role of de novo protein synthesis in the osmotic adaptation of the halotolerant alga Dunaliella . FEBS Lett , 1989, 244(1): 93-98. [33] 李红萍, 焦新之. 杜氏盐藻渗透调节过程中的甘油代谢途径. 植物生理学报, 1994, 20(1): 91-99. [34] 魏娟, 吕芳芳, 唐欣昀, 张海生, 曹媛媛, 赵良侠. 葡萄糖对杜氏盐藻3-磷酸甘油脱氢酶活性的影响. 广西植物, 2009, 29(4): 556-560. [35] 李林, 王钦宏, 杨海麟, 王武. 微藻( Chlorella sorokiniana )的转录组分析: 油脂生物合成相关的途径解析和基因挖掘. 微生物学报, 2014, 54(9): 1010-1021. [36] Alkayal F, Albion RL, Tillett RL, Hathwaik LT, Lemos MS, Cushman JC. Expressed sequence tag (EST) profiling in hyper saline shocked Dunaliella salina reveals high expression of protein synthetic apparatus components. Plant Sci , 2010, 179(5): 437-449. [37] 陈昊, 蒋桂雄, 龙洪旭, 谭晓风. 基于油桐种子3个不同发育时期转录组的油脂合成代谢途径分析. 遗传, 2013, 35(12): 1403-1414. [38] 李铁柱, 杜红岩, 刘慧敏, 乌云塔娜, 王淋, 叶生晶. 杜仲果实和叶片转录组数据组装及基因功能注释. 中南林业科技大学学报, 2012, 32(11): 122-130. (责任编委: 赵方庆) |