遗传

• 研究报告 •    

基于microRNA与生物信息学筛选非梗阻性无精子症的生物标志物

李志宏1, 陈淼琪1, 袁晓珺1, 黄华君1, 黄琬婷1, 周飘雁1, 曾晨1, 冯许诺1, 杨洛瑶1, 黄树强1, 谭翠钰1, 陈彩蓉1,2, 颜秋霞1,2   

  1. 1. 广州医科大学附属清远医院,清远市人民医院生殖医学中心,清远511518

    2. 广东省尿控及生殖医学创新工程技术研究中心,清远511518

  • 收稿日期:2025-07-02 修回日期:2025-10-24 发布日期:2025-10-30
  • 基金资助:

    广东省基础与应用基础研究基金(编号:2025A15150126292023A15152201292019A1515010249),广东省中医药局科研项目(编号:20241387),广州医科大学附属清远医院(清远市人民医院)开放课题基金(编号:202301-306202301-104),广州医科大学创新能力提升计划项目(编号:240603131131240603131129);广东省大学生创新训练计划项目(编号:S202410570053)资助

Identification of biomarkers for non-obstructive azoospermia based on microRNA and bioinformatics screening

Zhihong Li1, Miaoqi Chen1, Xiaojun Yuan1, Huajun Huang1, Wanting Huang1, Piaoyan Zhou1, Chen Zeng1, Xunuo Feng1, Luoyao Yang1, Shuqiang Huang1, Cuiyu Tan1, Cairong Chen1,2, Qiuxia Yan1,2   

  1. 1. Center for Reproductive Medicine, the Affiliated Qingyuan Hospital (Qingyuan People's Hospital), Guangzhou Medical University, Qingyuan, 511518, China

    2. Guangdong Engineering Technology Research Center of Urinary Continence and Reproductive Medicine, the Affiliated Qingyuan Hospital (Qingyuan People's Hospital), Guangzhou Medical University, Qingyuan, 511518, China

  • Received:2025-07-02 Revised:2025-10-24 Online:2025-10-30
  • Supported by:
    Supported by Guangdong Basic and Applied Basic Research Foundation (Nos2025A15150126292023A15152201292019A1515010249), the Scientific Research Project of Guangdong Province Bureau of Traditional Chinese Medicine (No. 20241387), the Open Research Funds from the Affiliated Qingyuan Hospital (Qingyuan Peoples Hospital), Guangzhou Medical University (Nos. 202301-306202301-104), the Plan on enhancing innovation capacity in Guangzhou Medical University(Nos. 240603131131240603131129), and the Innovation training Program for university students in Guangdong province (No. S202410570053)

摘要:

microRNA (miRNA)在非梗阻性无精子症(non-obstructive azoospermiaNOA)的发生中发挥着重要作用,但目前仍缺乏对其调控靶基因表达介导NOA发生分子机制的研究。本研究GEO数据库获取NOA相关的miRNA数据集,通过差异分析、加权基因共表达网络分析(weighted correlation network analysisWGCNA)和LASSO回归筛选得到4个关键miRNA。基于miRDB数据库预测miRNA的靶点基因,与NOA转录组数据集的差异表达基因(differential expressed genesDEGs)取交集,获得18DEGs。精子发生评分模型显示18DEGs总表达水平与精子发生评分呈显著正相关,证明上述DEGs可能与NOA的发生相关。将18DEGs纳入机器学习,最终鉴定出4个最具有诊断价值的关键基因MGARPFER1L5SNX2PAPOLB。在NOA小鼠模型中,MGARPSNX2表达上调,而FER1L5PAPOLB表达下调,与NOA数据集表达趋势一致。以上结果表明MGARPFER1L5SNX2PAPOLB可作为NOA的新型标志物,为NOA的机制研究与临床诊断提供理论基础和实验依据。

关键词:

miRNA, 非梗阻性无精子症, 精子发生, 机器学习, 生物信息学

Abstract:

MicroRNAs (miRNAs) play an important role in the occurrence of non-obstructive azoospermia (NOA). Nevertheless, there is still a lack of research on the molecular mechanisms by which miRNAs regulate target genes to mediate NOA at present. In this study, we obtained NOA-related miRNA datasets from the GEO database and applied differential expression matrices combined with weighted correlation network analysis (WGCNA) and LASSO regression (LASSO) to identify four key miRNAs. Based on the miRDB database, the target genes of these miRNAs were predicted and intersected with the differentially expressed genes (DEGs) in the NOA transcriptome datasets. This intersection resulted in the identification of 18 DEGs. The spermatogenesis score model revealed a significant positive correlation between the overall expression level of these 18 DEGs and spermatogenesis scores, suggesting their potential involvement in NOA development. These 18 DEGs were subsequently incorporated into machine learning, leading to the identification of four hub genes with high diagnostic value: MGARP, FER1L5, SNX2, and PAPOLB. In the NOA mouse model, MGARP and SNX2 were upregulated, whereas FER1L5 and PAPOLB were downregulated, consistent with the expression trends observed in the NOA datasets. These findings indicate that MGARP, FER1L5, SNX2, and PAPOLB may serve as novel biomarkers for NOA, providing a theoretical and experimental foundations for elucidating its mechanisms and improving clinical diagnosis.

Key words:

miRNA, non-obstructive azoospermia, spermatogenesis, machine learning, bioinformatics