[1] Cann RL, Stoneking M, Wilson AC. Mitochondrial DNA and human evolution. Nature, 1987, 325(6099): 31-36.[2] Stringer CB, Andrews P. Genetic and fossil evidence for the origin of modern humans. Science, 1988, 239(4845): 1263-1268.[3] Wolpoff MH, Hawks J, Frayer DW, Hunley K. Modern human ancestry at the peripheries: a test of the replacement theory. Science, 2001, 291(5502): 293-297.[4] Mellars P. Neanderthals and the modern human colonization of Europe. Nature, 2004, 432(7016): 461-465.[5] Krings M, Stone A, Schmitz RW, Krainitzki H, Stoneking M, Pääbo S. Neandertal DNA sequences and the origin of modern humans. Cell, 1997, 90(1): 19-30.[6] Krings M, Geisert H, Schmitz RW, Krainitzki H, Pääbo S. DNA sequence of the mitochondrial hypervariable region II from the Neandertal type specimen. Proc Natl Acad Sci USA, 1999, 96(10): 5581-5585.[7] Krings M, Capelli C, Tschentscher F, Geisert H, Meyer S, von HaeselerA, Grossschmidt K, Possnert G, Paunovic M, Pääbo S. A view of Neandertal genetic diversity. Nat Genet, 2000, 26(2): 144-146.[8] Currat M, Excoffier L. Modern humans did not admix with Neanderthals during their range expansion into Europe. PLoS Biol, 2004, 2(12): e421.[9] Serre D, Langaney A, Chech M, Teschler-Nicola M, Paunovic M, Mennecier P, Hofreiter M, Possnert G, Pääbo S. No evidence of Neandertal mtDNA contribution to early modern humans. PLoS Biol, 2004, 2(3): e57.[10] Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PLF, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, Egholm M, Rudan P, Brajkovi? D, Ku?an ?, Guši? I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell, 2008, 134(3): 416-426.[11] Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajkovic D, Kucan ?, Guši? I, Schmitz R, Doronichev VB, Golovanova LV, de la Rasilla M, Fortea J, Rosas A, Pääbo S. Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science, 2009, 325(5938): 318-321.[12] Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, García-Tabernero A, García-Vargas S, Sánchez-Quinto F, Ramírez O, Civit S, Bastir M, Huguet R, Santamaría D, Gilbert MTP, Willerslev E, de la Rasilla M. Genetic evi-dence for patrilocal mating behavior among Neandertal groups. Proc Natl Acad Sci USA, 2011, 108(1): 250-253.[13] Mellars PA, French JC. Tenfold population increase in western Europe at the Neandertal-to-Modern human transition. Science, 2011, 333(6042): 623-627.[14] Weaver TD, Roseman CC, Stringer CB. Close correspon-dence between quantitative- and molecular-genetic diver-gence times for Neandertals and modern humans. Proc Natl Acad Sci USA, 2008, 105(12): 4645-4649.[15] Jorde LB, Watkins WS, Bamshad MJ, Dixon ME, Ricker CE, Seielstad MT, Batzer MA. The distribution of human genetic diversity: a comparison of mitochondrial, auto-somal, and Y-chromosome data. Am J Hum Genet, 2000, 66(3): 979-988.[16] Currat M, Excoffier L. Modern humans did not admix with Neanderthals during their range expansion into Europe. PLoS Biol, 2004, 2(12): e421.[17] Hawks J, Wolpoff MH. Paleoanthropology and the popu-lation genetics of ancient genes. Am J Phys Anthro-pol, 2001, 114(3): 269-272.[18] Relethford JH. Absence of regional affinities of Neander-tal DNA with living humans does not reject multiregional evolution. Am J Phys Anthropol, 2001, 115(1): 95-98.[19] Trinkaus E, Moldovan O, Milota ?, Bîlg?r A, Sarcina L, Athreya S, Bailey SE, Rodrigo R, Mircea G, Higham T, Ramsey CB, van der Plicht J. An early modern human from the Pe?tera cu Oase, Romania. Proc Natl Acad Sci USA, 2003, 100(20): 11231-11236.[20] Plagnol V, Wall JD. Possible ancestral structure in human populations. PLoS Genet, 2006, 2(7): e105.[21] Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC. Metagenomics to pa-leogenomics: large-scale sequencing of mammoth DNA. Science, 2006, 311(5759): 392-394.[22] Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet, 2008, 24(3): 133-141.[23] Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, Simons JF, Du L, Egholm M, Rothberg JM, Paunovic M, Pääbo S. Analysis of one million base pairs of Neanderthal DNA. Nature, 2006, 444(7117): 330-336.[24] Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM. Sequencing and analysis of Neanderthal genomic DNA. Science, 2006, 314(5802): 1113-1118.[25] Wall JD, Kim SK. Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genet, 2007, 3(10): 1862-1866.[26] Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai WW, Fritz MHY, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bone T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nus-baum C, Lander ES, Russ C, Novod N, Affourtit J, Eg-holm M, Verna C, Rudan P, Brajkovi? D, Ku?an ?, Guši? I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S. A draft sequence of the Neandertal genome. Science, 2010, 328(5979): 710-722.[27] Dalton R. Neanderthals may have interbred with humans. http://www.nature.com/news/2010/100420/full/news.2010.194.html[28] Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PLF, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu QM, Mallick S, Li H, Meyer M, Eichler EE, Stoneking M, Richards M, Talamo S, Shunkov MV, Derevianko AP, Hublin JJ, Kelso J, Slatkin M, Pääbo S. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 2010, 468(7327): 1053-1060.[29] Templeton AR. Out of Africa again and again. Nature, 2002, 416(6876): 45-51.[30] 吴新智. 现代人只起源于非洲抑或起源于多地区. 科学, 2006, 58(5): 32-36.[31] Yotova V, Lefebvre JF, Moreau C, Gbeha E, Hovhanne-syan K, Bourgeois S, Bédarida S, Azevedo L, Amorim A, Sarkisian T, Avogbe PH, Chabi N, Dicko MH, Kou' Santa Amouzou ES, Sanni A, Roberts-Thomson J, Boettcher B, Scott RJ, Labuda D. An X-linked haplotype of Neandertal origin is present among all non-African populations. Mol Biol Evol, 2011, 28(7): 1957-1962.[32] Mellars P. Why did modern humans populations disperse from Africa ca. 60 000 years ago? A new model. Proc Natl Acad Sci USA, 2006, 103(25): 9381-9386.[33] Duarte C, Maurício J, Pettitt PB, Souto P, Trinkaus E, van der Plicht H, Zilhão J. The early Upper Paleolithic human skeleton from the Abrigo do Lagar Velho (Portugal) and modern human emergence in Iberia. Proc Natl Acad Sci USA, 1999, 96(13): 7604-7609.[34] Mellars P. The Neanderthal problem continued. Curr Anthropol, 1999, 40(3): 341-350.[35] Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, Pugach I, Ko AM, Ko YC, Jinam TA, Phipps ME, Saitou N, Wollstein A, Kayser M, Pääbo S, Stoneking M. Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania. Am J Hum Genet, 2011, 89(4): 516-528.[36] Skoglund P, Jakobsson M. Archaic human ancestry in East Asia. Proc Natl Acad Sci USA, 2011, 108(45): 18301-18316.[37] Gralle M, Schäfer I, Seibel P, Pääbo S. A functional test of Neandertal and modern human mitochondrial targeting sequences. Biochem Biophys Res Commun, 2010, 402(4): 747-749.[38] Smith FH, Jankovi? I, Karavani? I. The assimilation model, modern human origins in Europe, and the extinction of Neandertals. Quaternary Intern, 2005, 137(1): 7-19.[39] Gralle M, Pääbo S. A comprehensive functional analysis of ancestral human signal peptides. Mol Biol Evol, 2011, 28(1): 25-28.[40] Kimura M. Evolutionary rate at the molecular level. Nature, 1968, 217(5129): 624-626.[41] Krause J, Lalueza-Fox C, Orlando L, Enard W, Green RE, Burbano HA, Hublin JJ, Hänni C, Fortea J, de la Rasilla M, Bertranpetit J, Rosas A, Pääbo S. The derived FOXP2 variant of modern humans was shared with Neandertals. Curr Biol, 2007, 17(21): 1908-1912.[42] Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Albert FW, de la Rasilla M, Fortea J, Rosas A, Lachmann M, Hannon GJ, Pääbo S. Targeted investigation of the Neandertal genome by array-based sequence capture. Science, 2010, 328(5979): 723-725.[43] Lalueza-Fox C, Römpler H, Caramelli D, Stäubert C, Catalano G, Hughes D, Rohland N, Pilli E, Longo L, Condemi S, de la Rasilla M, Fortea J, Rosas A, Stoneking M, Schöneberg T, Bertranpetit J, Hofreiter M. A melano-cortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science, 2007, 318(5855): 1453-1455.[44] Lalueza-Fox C, Gigli E, de la Rasilla M, Fortea J, Rosas A. Bitter taste perception in Neanderthals through the analy-sis of the TAS2R38 gene. Biol Lett, 2009, 5(6): 809-811.[45] Lalueza-Fox C, Gigli E, de la Rasilla M, Fortea J, Rosas A, Bertranpetit J, Krause J. Genetic characterization of the ABO blood group in Neandertals. BMC Evol Biol, 2008, 8(1): 342.[46] Evans PD, Mekel-Bobrov N, Vallender EJ, Hudson RR, Lahn BT. Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage. Proc Natl Acad Sci USA, 2006, 103(48): 18178-18183.[47] Prabhakar S, Noonan JP, Pääbo S, Rubin EM. Accelerated evolution of conserved noncoding sequences in humans. Science, 2006, 314(5800): 786.[48] Haygood R, Fedrigo O, Hanson B, Yokoyama K, Wray G. Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. Nat Genet, 2007, 39(9): 1140-1144.[49] Briggs AW, Stenzel U, Meyer M, Krause J, Kircher M, Pääbo S. Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic Acids Research, 2010, 38(6): e87.[50] Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, Pääbo S. The Neandertal ge-nome and ancient DNA authenticity. EMBO J, 2009, 28(17): 2494-2502.[51] Krause J, Fu QM, Good JM, Viola B, Shunkov MV, Dere-vianko AP, Pääbo S. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature, 2010, 464(7290): 894-897. |