遗传 ›› 2013, Vol. 35 ›› Issue (2): 192-201.doi: 10.3724/SP.J.1005.2013.00192

• 研究报告 • 上一篇    下一篇

草鱼野生群体遗传变异的微卫星分析

傅建军1, 李家乐1, 沈玉帮1, 王荣泉2, 宣云峰2, 徐晓雁1, 陈勇1   

  1. 1. 上海海洋大学, 农业部淡水水产种质资源重点实验室, 上海 201306 2. 江苏吴江国家级四大家鱼原种场, 吴江 215221
  • 收稿日期:2012-09-25 修回日期:2012-12-18 出版日期:2013-02-20 发布日期:2013-02-25
  • 通讯作者: 李家乐 E-mail:jlli2009@126.com
  • 基金资助:

    现代农业产业技术体系建设项目(编号:CARS-46-04), 国家科技支撑计划项目(大宗淡水主养鱼类新品种选育)(编号:2012BAD26B02)和上海市重点学科建设项目(编号:Y1101)资助

Genetic variation analysis of wild populations of grass carp (Ctenopharyngodon idella) using microsatellite markers

FU Jian-Jun1, LI Jia-Le1, SHEN Yu-Bang1, WANG Rong-Quan2, XUAN Yun-Feng2, XU Xiao-Yan1, CHEN Yong1   

  1. 1. Key Laboratory of Freshwater Fishery Germplasm Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai 201306, China 2. Wujiang National Farm of Four Major Domesticated Chinese Carps, Wujiang 215221, China
  • Received:2012-09-25 Revised:2012-12-18 Online:2013-02-20 Published:2013-02-25

摘要: 利用12个微卫星标记, 对来自长江水系(邗江、吴江、九江、石首、木洞和万州)、珠江水系(肇庆)和黑龙江水系(嫩江)的8个草鱼野生地理群体进行了遗传多样性及遗传结构等分析。遗传多样性分析显示, 12个微卫星位点均为高度多态位点(PIC=0.755~0.930), 8个草鱼野生群体显示出较高的遗传多样性水平(Ho=0.839~0.893), 其中长江水系的6个群体和肇庆群体的多样性水平高于嫩江群体。瓶颈效应分析显示, 嫩江、肇庆群体及2个长江上游群体(木洞、万州)近期出现了瓶颈效应, 群体数量发生下降。群体间遗传分化指数FST及AMOVA分析显示, 群体间出现极显著遗传分化(P<0.01), 整体分化水平较低(FST<0.05)。遗传距离分析结果显示, 长江水系的6个群体与肇庆群体遗传距离较近, 与嫩江群体较远; 基于此的UPGMA聚类树显示, 长江水系下游、中游和上游的群体依次聚类, 然后与肇庆群体聚类, 最后与嫩江群体聚类, 遗传距离与地理距离呈现出较强的正相关性。遗传结构分析显示, 所有样本被划分为5个理论群, 肇庆和嫩江群体中个体的遗传结构相对独立, 而长江上游、中游和下游群体中个体的遗传结构则存在一定程度的混杂。综上所述, 中国草鱼野生资源具有较高的遗传多样性, 地理群体间存在遗传分化, 具有进一步遗传改良的潜力; 但部分群体出现的瓶颈效应也需要引起重视。

关键词: 草鱼, 野生群体, 遗传多样性, 瓶颈效应, 遗传结构

Abstract: Twelve microsatellites were used to analyze the genetic diversity and genetic structure of eight wild populations of grass carp, among which six populations from Yangtze River (Hanjiang, Wujian, Jiujiang, Shishou, Mudong, and Wanzhou), one population from Pearl River and Heilongjiang River for each, Zhaoqing, and Nenjiang, respectively. Twelve markers showed highly polymorphic and all the eight populations contained high genetic variations. The variations of six populations of Yangtze River and Zhaoqing population of Pearl River were higher than Nenjiang population of Heilongjiang River. Bottleneck analysis revealed that four populations (Zhaoqing, Nenjiang, Mudong, and Wangzhou) had experienced a recent genetic bottleneck, and the effective population size was reduced. Pairwise FST and AMOVA analysis detected significant genetic difference among populations. The pairwise population genetic distances and the UPGMA tree demonstrated that the genetic distances between six populations of Yangtze River and Zhaoqing population were closer and clustered together earlier, as compared to those populations with Nenjiang population. The genetic structure simulation analysis suggested that there were five logic populations of all individuals. The genetic structures of Zhaoqing and Nenjiang populations were shown with independent separation, but the genetic structures of populations from Yangtze River were shown with fuzzy distribution. The high diversity was found in the wild grass carp from three major watersheds in China, which would supply a basis for future genetic improvement. However, the bottleneck effect of some populations should be taken into account in the practical breeding programs.

Key words: Ctenopharyngodon idella, wild population, genetic diversity, bottleneck effect, genetic structure

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